Total Result(s) Found: 127
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Green solvents for membrane fabrication
Program:
Chemical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Suzana Nunes
Separations are crucial in the chemical and pharmaceutical industry. Membrane technology has a growing relevance as a sustainable and competitive method. Developing highly selective membranes for processes like nanofiltration, reverse osmosis and gas separation. Membrane fabrication is a solution process that requires huge amounts of solvents with generation of waste. Many of these solvents have already restrictions of use with perspective of being banned. Greener alternatives must be found to guarantee the future of the membrane industry. The focus of this project is the identification of new natural solvents and their use to fabricate nanoengineered membranes.
BAS/1/1057-01-01
suzana.nunes@kaust.edu.sa
Chemical engineering
Chemical engineering
Solubilization of polymers in potential green solvents.Characterization by electron microscopy, chemical analysis and performance in nanofiltration or gas separation experiments. Integration into membranes in form of multilayers in the form of flat-sheet or hollow fibers with controlled porosity.
Chemical Engineering
Physical Sciences and Engineering
Interfacial polymerization for membrane application
Program:
Chemistry
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Suzana Nunes
Separations are crucial in the chemical and pharmaceutical industry. Membrane technology has a growing relevance as a sustainable and competitive method. Developing highly selective membranes for processes like nanofiltration, reverse osmosis and gas separation. The focus of this project is the use of new functionalized monomers nanoengineered to generate ultra-thin selective layers for membranes.
BAS/1/1057-01-01
suzana.nunes@kaust.edu.sa
Chemistry
Chemistry
Highly crosslinked selective layers based on functionalized monomers and interfacial polymerization. Characterization by electron microscopy, chemical analysis and performance in nanofiltration or gas separation experiments. Integration into membranes in form of multilayers in the form of flat-sheet or hollow fibers with controlled porosity at the molecular level.
Chemistry
Biological and Environmental Sciences and Engineering
Autonomous Mining: Leveraging Silicon Photonics-Integrated LiDAR for Driverless Systems
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Yating Wan
This proposal addresses the urgent need for smart construction solutions in the Kingdom of Saudi Arabia (KSA), given the challenging desert terrain and extreme weather conditions. Autonomous haulage trucks, equipped with advanced sensors such as light detection and ranging (LiDAR), present a promising solution for efficient, large-scale material transport in these harsh environments. However, deploying this technology presents challenges, primarily because current LiDAR systems are not tailored for desert environments. Market-available LiDAR products, generally designed for urban traffic scenarios, fall short of the stringent requirements in autonomous mining applications. Traditional mechanical LiDAR systems are not suited to withstand the harsh temperatures and vibrations encountered in mines, and the presence of dense dust significantly reduces their ability to accurately detect and identify targets. To address these challenges, we will focus on improving the reliability of LiDAR hardware and the functionality of its software. The goal is to develop a solid-state LiDAR prototype that incorporates 3D point cloud processing capabilities, making it suitable for the mining operations in complex desert environments.
Our project focuses on enhancing the solid-state Frequency Modulated Continuous Wave (FMCW) LiDAR systems, particularly on developing FMCW laser sources with narrow linewidths for long-range detection, strong anti-vibration, and high thermal stability. To achieve scalable and compact laser sources, quantum dot (QD) lasers and semiconductor optical amplifiers (SOAs) will be integrated onto silicon photonics via heterogeneous integration. This strategy significantly simplifies the assembly of active components like lasers, amplifiers, and photodetectors onto a heterogeneous III-V/Si platform, thereby reducing both complexity and cost. A detailed model for frequency-modulated light sources will be established, incorporating a closed-loop calibration algorithm and a coordinated control mechanism for an auxiliary on-chip optical path. To boost the environmental adaptability of this LiDAR prototype, perception and prediction algorithms will be embedded. A novel 3D point clouds denoising method will be introduced, utilizing both spatial and temporal properties to address interference from airborne dust in sandy environments. Vision Transformers (ViT) will be utilized for advanced feature extraction, enhancing the system's ability to understand complex 3D environments and interactive objects, thereby ensuring accurate instance segmentation. Given the coexistence of autonomous and manned vehicles in mining environments that creates complex traffic scenarios, a prediction algorithm will be developed based on inverse reinforcement learning, to forecast decisions and trajectories of vehicles identified by LiDAR. Altogether, this comprehensive strategy will enhance navigational safety and operational efficiency of autonomous haul trucks within the challenging desert landscapes of Saudi Arabia.
The FMCW solid-state LiDAR prototype developed in this project will feature advanced hardware capabilities, including Output Average Optical Power ≥ 30 mW, Horizontal Field of View ≥ 120°, Vertical Field of View ≥ 30°, and Angular Resolution≤0.15°. On the software side, it will offer precise target segmentation functionality with overall accuracy≥70%, along with prediction capabilities that ensure Average Displacement Error ≤ 2m and Final Displacement Error ≤5m within the subsequent 8 seconds. The performance of the prototype will be rigorously tested and verified on the KAUST campus. As the project progresses, various technologies developed could be made available for licensing, offering significant commercialization prospects. This research will facilitate the wider implementation of autonomous haulage in smart construction sites across KSA, tackling the unique challenges posed by the desert terrain and extreme weather conditions.
BAS/1/1700-01-01
xiangpeng.ou@kaust.edu.sa
FMCW LiDAR ; QD lasers
Photonics, Physics, Semiconductors
The students are expected to acquire the basic knowledge of the design of the integrated silicon photonics chips, proficient skills of device designs using simulation tools, hand-on experimental experiences of optoelectronic device characterizations, and conference/journal publications.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Broadband Photonics with Quantum Dot Driven Thin-Film Lithium Niobate Integrated Circuits
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Yating Wan
Thin-film lithium niobate (TFLN), often termed the "silicon of photonics," is distinguished by its strong electro-optic response (r33 = 30 pm/V), wide transparency window (400 nm – 5 μm), and high refractive index (~2.2). TFLN wafers merge the benefits of traditional bulk LN devices with smaller footprints and lower power consumption, through scalable fabrication methods similar to those in silicon photonics. Available in diameters up to 6 inches—with 8 inches on the horizon—these wafers showcase propagation losses of < 0.03 dB/cm in waveguides and Q factors exceeding 108 in microresonators. In addition to exceptional modulator metrics (bandwidths >
BAS/1/1700-01-01
xiangpeng.ou@kaust.edu.sa
Quantum Dot Lasers; Thin-film lithium niobate
Photonics, Physics, Semiconductors
The students are expected to acquire the basic knowledge of the design of the integrated silicon photonics chips, proficient skills of device designs using simulation tools, hand-on experimental experiences of optoelectronic device characterizations, and conference/journal publications.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Fast and Energy-efficient Photonic Integrated Circuits Powered by On-chip Lasers for Artificial Intelligence Models
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Yating Wan
The rise of AI-driven services has triggered a significant increase in the demand for both processing capacity and energy efficiency. Currently, the performance of electronic processors is limited by power dissipation, integration density, and clock speed, especially for matrix-vector multiplication (MVM), which comprises more than 80% of the operations in modern AI models.
In contrast, optical neural networks (ONNs) provide a promising alternative by exploiting intrinsic photon properties to calculate MVM, offering ultra-high bandwidth and processing frequency (>100GHz), ultra-low power consumption (sub-pJ/bit), and high parallelism through additional dimension division multiplexing. Silicon photonics, with its advantages of CMOS compatible manufacturability and high-density integration capacity, stands out as a promising platform for the realization of ONNs. However, the inherent indirect bandgap of silicon has hindered the progress of on-chip light sources compared to other photonic devices, creating a significant bottleneck for industrial-scale production.
Leveraging Intel’s silicon photonics platform, our team earlier has led the integration of quantum dot (QD) lasers with silicon photonic integrated circuits (PICs). In this project, we aim to further develop a volume-manufacturable, fully integrated ONN system with high bandwidth and energy efficiency. This is in contrast to the bulky off-chip solution that requires ~(2dB+6dB) power in coupling and modulation alone. A key component of this system is the compact, energy-efficient, and robust QD laser source, which will be achieved via efficient coupling to planar waveguides, optical modulators, buffers, and wavelength multiplexers in the Si-on-insulator PIC platform.
After addressing critical challenges in on-chip light sources, we will co-design hardware and software for a fully integrated ONN system. We propose a crossbar architecture utilizing micro-ring arrays, which maximizes on-chip laser benefits by offering compactness and high parallelism. Simulations of our preliminary ONN model have demonstrated over 91% recognition accuracy on the Modified National Institute of Standards (MNIST) dataset with an overall system computational density exceeding 0.27 TOPS/mm2. Leveraging a 65 nm standard CMOS process line at Intel and the on-chip non-volatile memory, we anticipate an experimental enhancement in computational density by over 70x compared to Google’s TPU accelerator, with a theoretical minimum power consumption reduction of over 1000x.
BAS/1/1700-01-01
xuhao.wu@kaust.edu.sa
optical neural network
Photonics, Physics, Semiconductors
The students are expected to acquire the basic knowledge of the design of the integrated silicon photonics chips, proficient skills of device designs using simulation tools, hand-on experimental experiences of optoelectronic device characterizations, and conference/journal publications.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Fine-Tuning of Foundation Models via Low-Rank Adaptation and Beyond
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Fine-tuning has become a popular approach to adapting large foundational models to specific tasks. As the size of models and datasets grows, parameter-efficient fine-tuning techniques are increasingly important. One of the most widely used methods is Low-Rank Adaptation (LoRA), with adaptation update expressed as the product of two low-rank matrices. While LoRA was shown to possess strong performance in fine-tuning, it often under-performs when compared to full-parameter fine-tuning (FPFT). Although many variants of LoRA have been extensively studied empirically, their theoretical optimization analysis is heavily under-explored.
BAS/1/1677-01-01
peter.richtarik@kaust.edu.sa
fine-tuning, PEFT, LoRA, QLoRA, RAC-LoRA, machine learning, AI, large language models
optimization, machine learning, artificial intelligence, computer science, mathematics
The goals of this project:
- Propose and evaluate (e.g., theoretically or empirically analyze) new fine-tuning methods, improving upon LoRA and other recently proposed FPFT methods
- Write a paper describing the new results, and submit it to a leading AI/ML conference, such as NeurIPS, ICML or ICLR
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Efficient Quantization of Large Language Models
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Quantizing large language models has become a standard way to reduce their memory and computational costs. Typically, existing methods focus on breaking down the problem into individual layer-wise sub-problems, and minimizing per-layer error, measured via various metrics.
BAS/1/1677-01-01
peter.richtarik@kaust.edu.sa
model quantization, large language models
computer science, artificial intelligence, mathematics, machine learning
The goals of this project:
- propose new quantization methods, outperforming existing approaches
- write a research paper describing the results and submit it to a leading AI/ML conference such as ICML, ICLR, NeurIPS
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Planning and operation of energy systems via risk-aware optimization
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Omar Knio
The primary objective of this project is to develop computational methodologies for risk-aware optimization and the implementation of these methodologies to optimize the operation of complex energy systems.
Examples include renewable power generation systems, buildings, district cooling plants, water desalination, water storage and energy storage systems. In all of these examples, cost effective operation of the associated
systems depends on the ability to forecast supply, and to forecast and control demand, and in light of these forecasts and control actions optimally schedule system operations. This necessitates the development of
robust optimization methodologies that can suitably address forecast uncertainties, and effectively handle a large number of discrete and continuous variables. This project will specifically focus on developing such
methodologies, and demonstrating their advantages in the context of model problems and practical applications.
BAS/1/1649-01-01
ricardo.lima@kaust.edu.sa
Optimization, control, energy systems
Computational Science
(1) Formulation of risk-aware optimization problem. (2) Validation and performance assessment of numerical implementation. (3) Case study demonstration. (4) Manuscript summarizing development and computational experiments.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Deep-sea sediments off the Al Wajh Carbonate Platform, Red Sea - Sample preparation and analysis
Program:
Energy Resources and Petroleum Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Volker Vahrenkamp
Professor Volker Vahrenkamp’s research team is currently recruiting for an up to 6-month internship joining the Carbonate Reservoirs Studies Group (CaResS Geology) at King Abdullah University of Science and Technology (KAUST), Thuwal, Kingdom of Saudi Arabia.
Project description: The Red Sea records climatic and associated sea-level and hydrological changes throughout the Quaternary. Extreme fluxes of windblown dust reflect high winds and extreme aridity in the region associated with glacial phases, meanwhile, geochemical data demonstrate enhanced humidity associated with interglacial phases and sea-level highstands. In the northern Red Sea, these environmental changes have influenced the development of steep-sloped shallow-water carbonate platforms and fringing reefs. Al Wajh is a land-attached carbonate platform in the northern Red Sea; it is almost completely rimmed by a reef shoal belt and characterised by a large and deep lagoon. Along the Red Sea basin, the deep-sea sediments are mainly controlled by the pelagic sedimentation and a background aeolian and sporadic fluvial input. While the deep-sea sediments from the southern and central regions near the axial trough and the African margin have been the most studied, the climate-driven deep-sea sedimentation basin off the Al Wajh carbonate in the northern region remains unclear.
BAS/1/1399-01-01
juliana.guzmangonzalez@kaust.edu.sa
Marine Sedimentology, Micro-palaeontology, Carbonate Geology
Marine Sedimentology, Micro-palaeontology, Carbonate Geology
The internship will focus on Pleistocene–Holocene marine microfossil analysis for further geochemical measurements and palaeoenvironmental applications. The project includes preparing sediment samples for the recovery of calcareous microfossils and isolation of the terrigenous sediment fraction, the collection and identification of foraminifera and planktic gastropods (pteropods) as well as characterizing samples geochemically. Also included are researching the taxonomy of Red Sea foraminifera and pteropods to identify the species that are targets for geochemical analyses.
Fields of study: sedimentology, micropalaeontology, geosciences.
Energy Resources and Petroleum Engineering
Physical Sciences and Engineering
Ali I. Al-Naimi Petroleum Engineering Research Center
Screening semiconductors for photoelectrochemical transistors
Program:
BioEngineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Sahika Inal
Screening semiconductors for photoelectrochemical transistorsThis project aims to explore various semiconducting materials in transistor channels and characterize their nonlinear response to light stimuli. The light response materials will be characterized electrochemically and transport properties will be studied.
BAS/1/1079-01-01
sahika.inal@kaust.edu.sa
Transistor, electrochemistry, photoexcitation
Transistor, electrochemistry, photoexcitation
Materials structure-functionality relationships with the photoelectrochemical properties, including oxygen reduction rates and photovoltage generation
BioEngineering
Biological and Environmental Sciences and Engineering
Improving Solar Corona Simulations with Advanced Boundary Conditions
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Matteo Parsani
The primary objective of this project is to advance the accuracy of solar corona simulations by developing a predictive model for short-term (ideally hourly) solar farside magnetograms. By improving the quality of magnetograms —key input data representing the magnetic field distribution on the solar surface— through the use of modern data processing, the goal is to enhance resolution and reduce noise, thereby significantly improving space weather forecasting. This work will enhance our ability to predict solar events such as flares and coronal mass ejections (CMEs), which is crucial for mitigating their impact on Earth’s technology. The project will also involve the development of high-order numerical solvers for solar corona modeling, aimed at enhancing predictive accuracy and contributing to both foundational research and practical applications in space
weather prediction.
REP/1/6262-01-01
matteo.parsani@kaust.edu.sa
Computational fluid dynamics, MHD equations, Solar corona
Computational Science and Scientific Machine Learning
Methodology:
Model Development: Explore and evaluate different models to identify the most effective approach for short-term magnetogram prediction, focusing on improving data quality. Train and validate the selected model using observational data to generate accurate AI-based magnetograms, ensuring that temporal dynamics are effectively captured. Magnetogram Prediction and Forecast
Integration: Use the developed model to predict future magnetograms and include them as input boundary conditions in a solar corona solver. Integrate these predictions into a comprehensive space weather forecasting pipeline, providing continuous and updated magnetogram inputs to enhance heliospheric simulations.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Laser-based Sensor for Environmental Monitoring
Program:
Mechanical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Aamir Farooq
The project involves design, development, and implementation of a laser-based optical sensor. The sensor will be used to monitor environmental pollutants (e.g., NOx, CO) and/or greenhouse gas emissions (e.g., N2O, CH4, CO2). The student will work on studying the electromagnetic spectrum of various molecules, choosing the candidate optical transitions, setting up the laser-based optical setup, and performing laboratory measurements to detect species concentration in trace quantities. Advanced sensing strategies, such as wavelength modulation, cavity-enhancement and frequency combs will be utilized. Machine-learning based methods will be used to enhance sensor sensitivity and selectivity, and to do de-noising. The student will gain expertise in spectroscopy, statistical thermodynamics, machine learning, optical engineering, and mechanical design.
BAS/1/1300-01-01
khalil.djebbi@kaust.edu.sa
Sensor, Optics, Lasers, Environmental Monitoring, Greenhouse Gas Emissions, Absorption Spectroscopy
Mechanical Engineering, Physics, Electrical Engineering, Chemical Engineering, Environmental Engineering
- Spectroscopic analysis - Optical design of the sensor - Experimental validation and demonstration of sensor performance
Mechanical Engineering
Physical Sciences and Engineering
Zero-carbon Fuels, e-Fuels and Biofuels: Analysis, Experiments and Modelling
Program:
Mechanical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Aamir Farooq
Zero-carbon fuels, e-fuels, and biofuels are essential for achieving global climate goals by providing sustainable alternatives to fossil fuels. They play a crucial role in reducing greenhouse gas emissions across various sectors, including transportation, industry, and energy production, thereby helping to mitigate climate change and transition towards a carbon-neutral future. Understanding the reaction pathways, ignition characteristics, and pollutant formation of these fuels is essential for developing efficient engines and minimizing emissions, ensuring that these sustainable alternatives can be effectively integrated into existing and future energy systems. In this project, the student will investigate physical, chemical, ignition and pollutant characteristis of candidate fuels. The work will invovle performing experiments with shock tubes, rapid compression machine, FTIR, and lasers. The student will also develop and optimize chemical kinetic models to predict the performance of these fuels in practical devices. Machine-learning baesd methods will be used to predict fuel properties and propose optimal fuel composition.
BAS/1/1300-01-01
khalil.djebbi@kaust.edu.sa
Net-zero, e-Fuels, Biofuels, Zero-carbon Fuels, Chemical Kinetics, Emissions, Efficiency, Engines, Gas Turbines
Mechanical Engineering, Chemical Engineering, Chemistry
- Perform life-cycle-analysis on the candidate fuels - Characterize various fuels in terms of their physical and chemical properties - Conduct detailed experiments on the chemical kinetics behavior of these fuels using shock tube and rapid compression machine - Develop and optimize chemical kinetics models to predict the performance of the fuels in practical devices - Propose optimal fuel formulations
Mechanical Engineering
Physical Sciences and Engineering
Understanding the stability pathways of Tin based perovskties
Program:
Materials Science & Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Derya Baran
Tin perovskites are interesting for several optoelectronic applications. They have complementary absorption to Lead ones for photovoltaic applications, and they offer a more environmentally friendly materials aspect. However, there are significant challenges with Tin based perovskites and their stability issues are not yet fully understood. This project aims to understand the degradation pathways for Tin based perovskties for the use of photovoltaic applications. The project will explore several tin-lead compositions and their corresponding films via optical, electrical and physical characterization tools exist under KAUST umbrella.
BAS/1395/01-01
luis.laznetta@kaust.edu.sa
perovskite, optoelectronic, photovoltaic
Chemistry and Materials Science
The project aims to deliver an understanding on the degradation pathways for Tin based perovskites in order to develop scavenging strategies for films and devices.
Materials Science & Engineering
Physical Sciences and Engineering
Understanding the energetics of organic semiconductors in photovoltaics
Program:
Materials Science & Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Derya Baran
The energetics of organic semiconductors play a significant role on determining several factors for device operation. For instance, open circuit voltage of an organic photovoltaic is determined by the energetic difference between ionization potential and electron affinity of donor and acceptor molecules. However, the way that we determine such energy levels vary depending on the method used. This project aims to develop a reliable and reproducible way of determining the energetics in organic semiconductors. The candidate will: process inks to create films of organic semiconductors from donors, acceptors and their blends. Measure photoelectron spectroscopy to determine the energy levels. Expose such organic semiconductors to external stress such as heat and light etc. And further determine the changes in energetics to create an understanding on the energetic landscape of organic semiconductors.
BAS/1395/01-01
anirudh.sharma@kaust.edu.sa
organic semiconductor, photovoltaic, energetics
chemistry, materials science
The project would deliver a list of energy levels determined for organic semiconductors and their blends and build an understanding on their stability and energetic landscape.
Materials Science & Engineering
Physical Sciences and Engineering
Optimal strategies for resource-task network problems
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
David Ketcheson
Resource-task network problems arise in both the industrial world and (in an idealized form) in many computer games (such as Minecraft or Factorio). In these problems, the goal is to transform a set of initial resources over time into more useful objects or resources, through the scheduling of tasks, which may involve resource extraction or manufacturing (often referred to as “crafting” in the game context. In some contexts these problems become more complex because some of the crafted entities are also tools or machines that can be used for crafting, resulting in a much deeper and more highly connected network of decisions and outcomes. The problem takes the form of an objective, such as to obtain a certain set of end products in the shortest possible time. Finding an optimal strategy is known to be a highly challenging task, and in most cases an optimal strategy is not known. This project will focus on optimization strategies for deep resource-task network problems, using networks from the game Factorio as test cases. A first approach to the problem is to discretize time and apply linear programming techniques, but this involves a number of efficiency tradeoffs. The student will work out this discretization and test and explore the effects of different choices. The goal will be to devise a strategy that outperforms those known and used by speedrunners, or to show that no such strategy exists. Additionally, if time permits, other approaches such as machine learning will be explored and tested.
BAS/1/1616-01-01
david.ketcheson@kaust.edu.sa
Optimization; resource-task network;
Optimization / Operations Research
- Computer code to solve deep resource task network problems - A paper detailing the methods and results, to be submitted for publication
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Non-terrestrial Communication System for Aerial-based Object Recognition and Positioning
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Basem Shihada
Modern aerial-based technology offers a promising way to ensure sustainability and increase productivity in the outdoor economy, such as agriculture, environment monitoring, and infrastructure inspection. UAVs play a crucial role in modern intelligent systems. Equipped with cameras and sensors, UAVs fly over large areas and capture high-resolution aerial imagery to provide real-time object information. Moreover, the wireless transceivers equipped on UAVs facilitate data collection and forwarding services. However, in remote desert areas, traditional terrestrial networks and electricity infrastructure are often unavailable. Satellite connections are not suitable due to high latency and expensive service charges. Using UAVs to set up a non-terrestrial wireless communication system is a more practical and cost-effective solution. The aim of this project is to utilize civilian single-lens drones to develop a cost-effective system for detecting and tracking objects from high-altitude perspectives and establish an energy-efficient non-terrestrial communication system. The student will focus on creating a robust model tailored for high-altitude object recognition, developing a positioning system that can handle the unique challenges of desert environments, and conducting thorough evaluations to ensure the wireless communication system is energy-efficient and sustainable.
BAS/1/1601-01-01
lau.pong@kaust.edu.sa
Computer Vision, Drones, Object recognition, Localization, Data training
Computer Engineering and Computer vision
1. Training a new deep learning model for object recognition from the UAV perspective. 2. Developing an object positioning and tracking system for desert environments from the UAV perspective. 3. Evaluating the energy consumption of building a non-terrestrial communication system by UAVs for object recognition and positioning.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Leveraging Non-Terrestrial Platforms
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Basem Shihada
As the research community has recently embarked on the 6G as an enabler for achieving higher data rates and better quality of service, an important new feature is resilient and ubiquitous network access in use-cases that are currently not provided by 5G. First, access on-demand: ships in the ocean, expeditions in harsh environments, and festivals in the field require network access only during the concerned activities. Second, emergency communications: the network resilience is seriously threatened by unexpected incidents. In these cases, fast-deployable solutions are crucial for providing emergency coverage. Finally, traffic off-loading: the network is only designed to accommodate standard traffic. However, the traffic fluctuates with time and location, and it may exceed the designed capacity. Therefore, flexible off-loading is required to provide a temporary bandwidth support. Non-Terrestrial systems provide a promising solution to these use-cases. The project aims at developing new approaches for the optimal leverage of the non-terrestrial network-on-demand.
BAS/1/1601-01-01
osama.amin@kaust.edu.sa
Data center HAPS, Networks, Non-Terrestrial Networks
Computer Networks
1. Perform a short-term traffic prediction to quantify the amount of traffic that needs to be offloaded to the HAPS 2. Perform a long-term traffic prediction to identify the number and location of HAPS required 3. Calculate the total energy budget used in the offloading process 4. Optimize the system energy and traffic latency using data-driven machine learning approaches
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Conservative Linear Multistep Methods For Time-dependent PDEs
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
David Ketcheson
Many important physical phenomena are modeled by partial differential equations (PDEs) and possess physically significant conserved quantities, such as momentum or energy. Numerical methods do not typically preserve these conserved quantities exactly, and as a result numerical solutions may deviate both qualitatively and quantitatively from the true solutions of the model. In this project we will develop a class of methods that enforce exact conservation (up to rounding errors) of a desired set of quantities. Conservation will be achieved through the technique known as multiple relaxation, which has already been developed in the context of Runge-Kutta methods. Here we will apply similar ideas to the class of linear multistep methods, thus obtaining conservative high-order methods that require only a single derivative evaluation per step.
BAS/1/1616-01-01
david.ketcheson@kaust.edu.sa
partial differential equations, numerical methods, conservation
Applied mathematics
The student will develop a Python code that implements multiple relaxation and is capable of solving a range of ODEs and PDEs. Additionally, the student will take the lead in preparing a paper for publication.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Statistical Inference for High Dimensional Models with Applications to Imaging Genetics
Program:
Statistics
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
The goal of this project is to develop statistical inference for high-dimensional models. This project is motivated by many studies in brain science. In particular, the intern will apply current and new methods for identifying neurological features associated with certain genetic traits. The project will address questions such as • Do subjects with similar genetic information tend to have similar brain imaging features? • what group of features extracted from biological data can help on disease diagnosis These questions will be addressed under the context of high-dimensional testing problem. Specific Tasks: (1) Read and summarized assigned papers. (2) Exploratory analysis of the data (3) Implementation of the methods using R to analyze the data (4) Submit report, poster, codes. Potential Impact: This project serves the Health and Welnness priority of the Kingdom. The methods will be refined and recalibrated for future application to data on the Saudi population. The methods here will not be confined only to imaging genetics. They can be used to study associations between factors and various diseases including those that are the priority of the kingdom.
BAS 1-1666-01-01
Hernando.Ombao@kaust.edu.sa
Statistical Models, Statistical Learning, Neuroscience
Statistics
The intern is expected to (1.) submit codes that were used in the analysis of the EEG-genetic data; (2.) paper that is of publishable quality using the template of the journal Annals of Applied Statistics; (3.) poster to be printed; (4.) seminar presentation.
Statistics
Computer, Electrical and Mathematical Sciences and Engineering
Conceptual design of membrane processes
Program:
Chemistry
Division:
Physical Sciences and Engineering
Faculty Name:
Zhiping Lai
The aim of this project is to simulate different membrane processes to develop rules of thumb for conceptual design of membrane processes. The student in this project will learn how to use the software Aspen Plus®, a wide used software in petrochemical industry, to simulate the membrane process for the separation of propylene and propane. Through this project, the student will learn all the basic knowledge of membrane processes, understand the reason why gas separation is so important in chemical industry and what are the advantages and challenges in the membrane studies. The education aim of the project is to stimulate the interest of the student in membrane studies.
BAS/1/1375-01-01
test@gmail.com
Aspen Plus®, Membrane Processes, Gas Separation, Propylene, Propane, Petrochemical Industry, Simulation, Membrane Studies
Chemical Engineering
Please contact professor for details.
Chemistry
Physical Sciences and Engineering
Graduate
Advanced Membranes and Porous Materials Center
Investigating the Design and Engineering of Nanobodies for Advanced Biomedical Applications
Program:
BioEngineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Magnus Rueping
This project focuses on the engineering and design of nanobodies, the smallest functional antibody fragments derived from camelid heavy-chain-only antibodies. Due to their small size, stability, and solubility, nanobodies are ideal for economical antigen capture in diagnostics, therapeutics, and biosensing. Moreover, the project also explores latest advancements in nanobody generation methods, and epitope prediction aided by computational techniques.
Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
dominik.renn@kaust.edu.sa
Nanobody; Bioengineering; Protein Chemistry; Biochemistry
Nanobody; Bioengineering; Protein Chemistry; Biochemistry
Students shall extend their general knowledge and skills in molecular biology and protein biochemistry. An emphasis will be put on expression, purification and characterization techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
BioEngineering
Biological and Environmental Sciences and Engineering
KAUST Catalysis Center
Cell-free Protein Synthesis of Next-Generation Therapeutics
Program:
BioEngineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Magnus Rueping
Conventional expression systems require a time span of several days or even weeks for functional therapeutic protein prototyping. This lengthy duration hampers the speed of process development and extends the prototyping period. Moreover, these systems are limited to the 20 canonical amino acids, thereby limiting the production of next-generation therapeutics such as antibody-drug conjugates.
Cell-free protein synthesis, also referred to as in vitro protein synthesis or CFPS, offers a potential solution to these constraints. The project’s objective is to explore and characterize our developed cell-free protein synthesis system. The system leverages the speed and adaptability of cell-free mechanisms to fast-track the prototyping of next-generation therapeutics.
Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
dominik.renn@kaust.edu.sa
Cell-free Protein Synthesis; Bioengineering; Protein Chemistry; Biochemistry
Cell-free Protein Synthesis; Bioengineering; Protein Chemistry; Biochemistry
Students shall extend their general knowledge and skills in molecular biology and protein biochemistry. An emphasis will be put on expression, purification and characterization techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
BioEngineering
Biological and Environmental Sciences and Engineering
KAUST Catalysis Center
Membrane development for sustainable separations
Program:
Chemical Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Suzana Nunes
The goal of this project is the development of multilayer polymeric membranes for liquid separation. The main target is the application in the pharmaceutical industry for the separation of complex mixtures of molecules with size smaller than 500 g/mol. The membranes are mainly prepared by interfacial polymerization as flat-sheet or hollow fibers. The characterization methods are chromatography, electron microscopy, and performance tests mimicking operational conditions. There will be possibilities of scaling up the membranes with the best performance.
ASP/1/1669-01-01
suzana.nunes@kaust.edu.sa
Chemistry
Chemistry or Chemical Engineering
Thin-film composite membranes for liquid separation
Chemical Engineering
Biological and Environmental Sciences and Engineering
Undergraduate
Uncovering and Addressing Bias in LLM Interactions
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Roberto Di Pietro
Large Language Models (LLMs) have become ubiquitous in contemporary applications. They are trained on extensive collections of human writings, ranging from books, papers, and news articles to conversations on social media platforms. This comprehensive approach enables the development of sophisticated tools capable of emulating human interactions with remarkable fidelity. However, it is important to recognize that LLMs might inherit and perpetuate the biases inherent in human communications.
This project represents a concerted effort to delve deeply into the multifaceted landscape of biases inherent in interactions with LLM agents. By examining various dimensions of biases, we aim to explore how these biases manifest within LLM-mediated interactions. Through this project, we would not only understand the complexities of bias within LLM interactions, but also explore the possibility to mitigate, neutralize, or rectify these biases. This will underline if LLMs are more inclined to change opinions than humans. This approach underscores our commitment to fostering fairness, equity, and inclusivity in the realm of LLM-driven communication and interaction, ultimately advancing the societal impact and ethical integrity of LLM technology.
BAS/1/1701-01-01
roberto.dipietro@kaust.edu.sa
LLM, moderation, bias, guardrail, security, privacy.
Computer Science
The project anticipates two primary outcomes: the creation of a system capable of simulating interactions within an online platform using LLMs as agents, and the utilization of the system to gain knowledge on the biases exhibited by LLMs across various operational scenarios.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Resilient Computing and Cybersecurity Center
Accelerated simulation of reactive flows using deep neural networks
Program:
Mechanical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Hong Im
Computational fluid dynamic (CFD) simulations of chemical reacting flows demand excessive computational time in order to solve a large number of highly nonlinear chemical reaction source terms. The project aims to develop an algorithm for accelerated computations by developing high fidelity reduced-order data-based chemical kinetics solver using autoencoder and neural network algorithm. The basic framework has been developed and the new project will apply the algorithm for renewable fuel applications over a wide range of thermodynamic conditions and assess the fidelity and performance enhancement of the new algorithm. The student will gain understanding of various modern machine learning tools in engineering applications with hands-on experience of programming and implementation.
BAS/1/1316-01-01
vijayamanikandan.vijayarangan@kaust.edu.sa
Machine learning, combustion modeling, computational fluid dynamics, reduced order modeling
Mechanical/aerospace engineering, computational modeling, machine learning
Implementation of the code modules, simulations and analysis of the results for assessment of fidelity and performance. Upon successful outcome, a conference and/or journal paper publication is expected.
Mechanical Engineering
Physical Sciences and Engineering
Clean Combustion Research Center
Predicting Bacterial Antimicrobial Resistance Phenotypes from Genomic Biomarkers
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Danesh Moradigaravand
The Infectious Disease Epidemiology lab of Prof. Danesh Moradigaravand
is looking for student interns to work on a range of projects on the
intersection of machine learning and microbial genomics. We are interested
in understanding the evolution and epidemiology of antimicrobial resistance
strains recovered from natural sources, including clinical and environmental
sites. Antimicrobial resistance is a global health threat, expected to become
a leading cause of deaths worldwide within the next three decades. This is
predominately due to the rapid emergence of novel genetic variants, which
lead to new resistance mechanisms. The understanding of the genetic
repertoire of resistance is henceforth important to design new antimicrobial
strategies and develop new compounds. In this project, the student will
develop a machine learning-based predictive model to systematically
identify resistance determinants in bacterial genomes. The projects
involves integration of genomic and phenomic data, generated by high
throughput phenotypic assays using an off-the-shelf machine learning
method. The student will implement an entire predictive pipeline and deploy
the model as a data science solution. The project helps student gain
hands-on experience of programming, next generation sequencing data
analysis and machine learning
BAS/1/1108-01-01
danesh.moradigaravand@kaust.edu.sa
Microbial genomics, Machine Learning
Microbial genomics
Develop and deploy a machine learning pipeline
Disclose a database of predictive biomarkers for antimicrobial resistance
Contribute to relevant publications
BioScience
Biological and Environmental Sciences and Engineering
Computational Bioscience Research Center
Design and performance evaluation of various emerging 6G wireless communication technologies
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Mohamed-Slim Alouini
The advent of 6G wireless communication systems heralds a new era of connectivity, promising unprecedented data rates, ultra-low latency, and ubiquitous coverage. We have at the CTL lab @ KAUST various research projects aiming to investigate the integration of several emerging technologies such as Free Space Optics (FSO), High Altitude Platform Systems (HAPS), and Low Earth Orbit (LEO) mega constellations to enhance the performance and capabilities of 6G networks. By leveraging the unique characteristics of each technology, this study seeks to address the challenges of achieving high-speed, reliable, and secure wireless communication in diverse environments and scenarios. These research projects (mentored by postdocs in the CTL group) will employ a multi-faceted approach combining literature review, theoretical analysis, simulation studies, and sometimes experimental validation.
BAS/1612
slim.alouini@kaust.edu.sa
6G, Wireless Communication Systems, Free Space Optics (FSO), High Altitude Platform Systems (HAPS), Low Earth Orbit (LEO) Mega Constellations, Integration, Seamless Handover, Resource Management.
Wireless Communication
1- regular progress report
2- final report that can be further polished for journal submission at the end of the internship
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Learning to Cooperate in Multi-robot Task Allocation
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Shinkyu Park
Imagine robots self-organizing into large groups to assist people with physically demanding tasks, leveraging their core capabilities in perception, manipulation, and navigation to interact with the physical world. To successfully complete a given mission as a team, these robots must make their own decisions to allocate and carry out tasks defined in the mission and cooperate with one another when the task requires it. We realize this capability in multirobot systems through a learning-based paradigm, designing computational models to train a large number of robots to work as a team. Achieving a high level of autonomy in distributed information processing, decision-making, and collaborative manipulation is crucial. To enable a high level of cooperation among a large number of robots, the project aims to build computational models based on deep reinforcement learning (DRL). These models are designed to enhance the robots' ability to cooperate in carrying out multiple tasks using their perception, manipulation, and navigation skills. Additionally, the project's goal is to implement these models on a multi-robot platform and validate the effectiveness of the models through lab experiments.
BAS/1/1695-01-01
shinkyu.park@kaust.edu.sa
Robotics, Machine Learning, Reinforcement Learning
Electrical and Computer Enginnering
The main objective of this project is to implement multi-agent DRL in a team of mobile manipulators and validate our DRL implementation through lab experiments. Students are expected to collaborate with lab members to explore new ideas and implement them on physical robotic systems. To fulfill the requirements of the project, students should have solid experience working with robotic systems and the Robot Operating System, as well as confidence in C++/Python programming. Experience with reinforcement learning is a plus. The model design and experiment reports are expected to be delivered at the end of the internship program.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Polkadot Graph Analysis
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Roberto Di Pietro
"Polkadot Graph Analysis" is an ongoing research project investigating the dynamics of a cryptocurrency network through transaction graph analysis. The project involves extracting and analyzing data from the Polkadot blockchain to understand transaction patterns, network structure, and potential anomalies. The contributions will span a broad spectrum: Beginning with the definition and categorization of transactions in the Polkadot network, the project's main goal is to design and build the full transaction graph to support further analysis rooted in sound graph theory. This analytical approach will allow the application of several metrics, including degree distribution, strongly/weakly connected components, density, and various centrality measures that will be useful in assessing many properties of the Polkadot network.
BAS/1/1701-01-01
roberto.dipietro@kaust.edu.sa
Graph Analysis, Cryptocurrencies, Security
Computer Science
The expected outcome of this project is twofold.
The student is expected to investigate the complex Polkadot environment to categorize on-chain events and data.
Secondly, the student will develop a novel tool to parse the Polkadot ledger efficiently and build the corresponding transaction graph.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Resilient Computing and Cybersecurity Center
Encrypted Traffic Classification
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Roberto Di Pietro
A notable trend in the rapidly evolving mobile technology domain is the increasing reliance on encrypted network packets to strengthen privacy and security. Nevertheless, certain unencrypted elements, such as packet size and other critical Internet functionalities, remain exposed despite this encryption. This project is dedicated to harnessing these aspects by developing a tool adept at classifying encrypted network packets. Utilising Deep Learning models, the tool is designed to categorise the traffic on a network and deduce the types of applications on mobile phones.
Positioned at the intersection of network security and AI-driven analysis, this innovative project emphasises developing and refining cutting-edge deep-learning models. These models are specifically designed to pinpoint the applications generating network traffic despite encryption. This capability is made possible by identifying unique patterns and traits within the data flow indicative of specific applications installed on a smartphone.
This project is committed to privacy, and ethical considerations are a vital aspect of this project. While encrypted packets bolster security, the ability of tools to categorise their contents and deduce installed applications poses privacy challenges. The project addresses these concerns by offering a solution that respects user privacy while yielding valuable insights into network traffic. Therefore, the project approaches these challenges with a solution that respects user privacy while providing valuable insights into network traffic. This balance of privacy with technological advancement sets a new standard in network traffic analysis, underscoring the project's innovative and conscientious approach.
BAS/1/1701-01-01
roberto.dipietro@kaust.edu.sa
Security, Encrypted traffic, Classification, Machine Learning
Computer Science
The expected outcome of this project is twofold.
The student is expected to design an innovative tool that can efficiently categorise mobile traffic by application and deduce the specific applications installed on each smartphone. Secondly, the student will work closely with team members to develop this tool and comprehensively analyse the traffic data gathered.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Resilient Computing and Cybersecurity Center
Materials Engineering for Soil Amendment in Saudi Arabia
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Himanshu Mishra
Our group has pioneered game-changing technology to couple the giga-scale challenge of organic landfill diversion with the giga-scale opportunity of desert agriculture and greening. We are producing engineered biochar (EnB) by pyrolyzing organic waste, such as chicken manure, crop residue, and food scraps, and subjecting it to a post-treatment. We are studying the effects of its application on food crops as well as native plants as a function of synthesis, post-treatment, dosing, nutrient loading, and variable irrigation regimes.
BAS/1/1070-01-01
lisa.okiexposito@kaust.edu.sa
sustainability, food-water security, desert rehabilitation,
materials engineering, food-water-climate security, organic landfill diversion
1) materials characterization - surface area, ion-exchange capacity,
2) application to plants - pot-scale and field work
3) monitoring plant health - yield, biomass growth (leaves, branches, stem, etc.), chlorophyll content, gas-exchange, etc.
4) analyzing results
5) scientific writing
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Modeling human early development with stem cell-based integrated embryo-like models
Program:
BioEngineering
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Mo Li
A peculiarity of human reproduction is the high rate of developmental failure before and after the time of embryo implantation. Understanding why early pregnancy failures occur is a significant question in the field but remains challenging due to the technical and ethical complexities involved in studying these developmental stages. Pluripotent stem cells have recently been used to construct various early developmental models that hold great promise in unlocking the mysteries of early human development and facilitating new reproductive therapies.
Human blastoids are one such valuable model for studying early human development. They can be derived from naïve pluripotent stem cells and consist of all three lineages of the preimplantation blastocyst. Current methods using static batch culture to generate human blastoids have limitations, including (i) low yield, (ii) the need for cell aggregation, which complicates genetic or drug screens, (iii) reproducibility issues due to an uncontrolled cellular environment, and (iv) the requirement for Aggrewell or similar confinements that can exert unnatural geometrical strains on blastoids. Additionally, current blastoid models exhibit instabilities in the development of post-implantation lineages. The candidates of this VSRP project are expected to work on developing methods for large-scale production of human blastoids under strict environmental control, improving post-implantation lineage differentiation of blastoids, and characterizing gene expression in a spatially resolved manner in single cells.
The successful outcome of the project is expected to significantly advance the development of in vitro human embryo models that faithfully recapitulate specific intricacies of embryogenesis. These models have the potential to be translated into applications in regenerative medicine, disease modeling, and personalized therapies.
BAS/1/1080-01-01
arun.chandrasekaran@kaust.edu.sa
blastoid, pluripotent stem cell, human development, reproductive biology, embryogenesis, regenerative medicine
stem cell, developmental biology, bioengineering
1. Developing methods for large-scale production of human blastoids under strict environmental control
2. Improving post-implantation lineage differentiation of blastoids
3. characterizing gene expression in blastoids in a spatially-resolved manner in single cells
BioEngineering
Biological and Environmental Sciences and Engineering
Parameter-free optimization, universal prediction, and Kolmogorov complexity
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Francesco Orabona
Online parameter-free optimization algorithms are optimization algorithms that do not require tuning of parameters, yet they provable achieve the optimal performance. The basic idea behind these algorithms is in the link between universal strategies for prediction with log loss and online convex optimization, first unveiled in Orabona&Pal (2016). By now, this line of work has produced a number of parameter-free optimization algorithms.
However, universal prediction with log loss is also connected to the concept of Kolmogorov complexity for binary strings, as showed by Cover (1974).
In this project, we aim at studying all these links, going from parameter-free optimization to Kolmogorov complexity, passing through universal prediction with log loss. We want to construct explicit reductions to transform each of these problem in one of the other ones. The final aim is to directly link convex optimization to an appropriate notion of computational complexity for functions. Moreover, we want to extend some of these concepts from binary strings to strings of bounded real numbers.
Given the theoretical nature of this project, the ideal candidate must have an excellent mathematical background.
BAS/1/1704-01-01
francesco.orabona@kaust.edu.sa
parameter-free, optimization, Kolmogorov complexity
Computer Science, Mathematics or a related discipline
Original research – contribution to a research paper
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Training dynamics of Adam
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Francesco Orabona
One of the most used algorithm to train deep neural networks is Adam. However, despite its empirical success, it is a poorly understood algorithm. In particular, existing mathematical theories fail to capture a quantifiable advantage over the classic stochastic gradient descent.
In this project, we will take a different route: Instead of studying Adam as a black-box under simplified assumptions, we will carefully analyze its empirical training dynamics, in particular in the first iterations. We aim at pinpointing the key differences between the training dynamics of Adam and the ones of stochastic gradient descent with momentum.
Later, using the gathered knowledge, we will formulate a mathematical model of its behavior.
BAS/1/1704-01-01
francesco.orabona@kaust.edu.sa
machine learning, optimization, Adam, SGD
Computer Science, Mathematics or a related discipline
Original research – contribution to a research paper
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Coral Microbiology and probiotics
Program:
Marine Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Raquel Peixoto
The use of Beneficial Microorganisms for Corals (BMCs) as coral probiotics is one new methods being explored for reef conservation, restoration and rehabilitation. Our group has proposed and proven the concept that BMCs can mitigate the impacts caused by thermal stress and pathogens (Rosado et al., 2019). Despite their documented success in protecting against coral bleaching, the mechanisms associated with this protection, its application, fate of inoculated microbes and success in natural systems, and BMC possible interactions or connectivity with other organisms in the reef, remain to be explored. For this reason, the intern will join current projects being currently developed by our group that aim to isolate, select, and assemble specific BMC consortia from the Red Sea coral reefs and evaluate its role in promoting coral growth, coverage, health and connectivity with other organisms as well as to perform a deep investigation of the symbiotic relationships between corals and their associated microbiota, and its ecological outcomes.
BAS/1/1095‐01‐01
helena.villela@kaust.edu.sa
coral probiotics, coral microbiology, microbiome stewardship, marine microbiomes
Marine Microbiology
Survey of molecular microbial-mediated mechanisms to promote coral health and growth.
Marine Science
Biological and Environmental Sciences and Engineering
Undergraduate
Red Sea Research Center
Natural Deep Eutectic Solvents for water remediation
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Geert-Jan Witkamp
Natural deep eutectic solvents (NADES) are composed of two or more natural compounds, such as organic acids and bases, sugars, amino acids, and polyalcohols that interact through hydrogen bonds, forming a stable liquid. Due to their components, these green solvents are more biodegradable, harmless, and environmentally friendly than similar solvents, such as ionic liquids and DES. In our research group, we focus on understanding the chemical and physical properties of NADES and their applications, e.g., biofouling cleaning solvents, wastewater pre-treatment agents, and liquid membrane carriers. In this project, the student will learn how to prepare and characterize green solvents and study their application in water remediation.
BAS/1/1087-01-01
andreia.farinha@kaust.edu.sa
NADES, Water remediation, Green Solvents
Environmental science and engineering
Contribute to the development of new methodologies for water treatments. Draft a publication with the latest findings.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Bioaccumulation of emerging contaminants in Red Sea coral reef organisms
Program:
Marine Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Susana Carvalho
Emerging contaminants (i.e., contaminants that have been recently in the ecosystem) are becoming a concern worldwide. Several studies have shown that contaminants can bioaccumulate in marine organisms, causing physiological and morphological impacts. Among these contaminants are some stimulants (caffeine) and medicines (e.g., diclofenac) that are commonly used by humans and end up frequently in the marine environment. Limited information is available in the Red Sea regarding the accumulation of emerging contaminants in coral reef organisms. Nevertheless, previous research in the region showed high concentrations of contaminants like caffeine and diclofenac in water samples collected near urbanized areas. This project aims to quantify the concentrations of caffeine and diclofenac in biological tissues of reef-associated organisms like corals and algae. This study will serve as the foundation to conduct ecotoxicological studies to investigate the response of those organisms to different concentrations of these emerging contaminants and guide environmental regulation. The student will participate in the processing of samples, quantification of contaminants, data analyses and writing. If time permits, one lab-based experiment will be conducted to assess the responses of coral larvae to observed concentration ranges of targeted contaminants.
BAS/1/1109-01-01
eva.aylagasmartinez@kaust.edu.sa
Bioaccumulation; Contaminants; Coral reefs; Environmental Impacts; Ecosystem Management
Ecotoxicology and Marine Biology
Draft of a publication based on the data collected.Develop and conduct a lab-based ecotoxicological experiment
Marine Science
Biological and Environmental Sciences and Engineering
Red Sea Research Center
Joint models for longitudinal and survival data
Program:
Statistics
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Haavard Rue
Joint models are essential is most biomedical applications due to their ability to model two data types simultaneously. In this project, the aim istodevelop vignettes for the implementation of joint models within theR-INLAframework. The prospective candidate would gain coding skills in R and potentially develop new statistical methodologies to handle real-world phenomena within the context of joint models.
BAS/1/1667-01-01
haavard.rue@kaust.edu.sa
Statistics
Statistics
Vignettes for the implementation of joint models within the R-INLA framework
Statistics
Computer, Electrical and Mathematical Sciences and Engineering
Continuous-mode SandX Rector Automation
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Himanshu Mishra
SandX is a nature-inspired super-water-repellent material comprised of common sand grains coated with paraffin wax in a 1:1000 mass ratio. When applied as a 1 cm-thick layer on the topsoil, SandX can dramatically reduce (~80%) the evaporative loss of water and increase biomass growth and crop yields by up to 70%. SandX’s efficacy to boost crop yields has been established via multi-year field trials on barley, wheat, tomato, green pepper, onions, and okra (Please refer to https://pubs.acs.org/doi/10.1021/acsagscitech.1c00148). After about 9 months of its application, SandX degrades into Sand and becomes a part of the soil. We have conducted soil microbiome analysis and found that it has no adverse impact on soil microbial diversity.
Currently, we are automating our pilot-scale continuous reactor for manufacturing SandX, which we are seeking an intern for assistance. The ideal candidate will have hands-on experience in automation, reactor engineering, control systems, sensors, software, data logging, etc.
BAS/1/1070-01-01
lisa.okiexposito@kaust.edu.sa
reactor engineering, automation, control systems, sensors, wetting, SandX
Engineering
1. assessment of off-the-shelf technologies
2. installation
3. testing, iteration, optimization
4. data collection and analysis
5. characterize SandX via contact angle goniometry
6. summarize findings in a report
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Unraveling the molecular basis of coral symbiosis and bleaching
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Manuel Aranda Lastra
Coral-algae symbiosis is essential for the survival and growth of corals and for the functioning of coral reef ecosystems. However, this symbiosis can be disrupted by various environmental stressors, such as high temperature, pollution, or disease. When this happens, the corals lose their algae and turn white, a phenomenon known as coral bleaching. Bleached corals are more vulnerable to mortality and may not recover their symbionts if the stress persists. Understanding the interactions between coral hosts and their algal symbionts under different environmental conditions is crucial for developing conservation strategies. At KAUST, we study these interactions at different levels, from the molecular underpinnings to the ecological contexts. We seek motivated students who want to learn more about this symbiotic relationship. The students will be able to learn various techniques and skills related to coral biology, molecular biology, and bioinformatics.
BAS/1/1036-01-01
guoxin.cui@kaust.edu.sa
coral symbiosis, coral bleaching, stress response
Ecological Genomics
This interdisciplinary project comprises wet-lab work (80%) and soft skills (20%). Soft skills are not mandatory but can be acquired during the project through the intern's initiative.
The project deliverables include:
1) Regular plan for growth and proliferation of sea anemones
2) Setting up experiments
3) Optimize existing protocols (nucleic acid extraction, HCR, FISH, etc.)
4) Basic data analysis (RNASeq, DNAseq,)
5) Consolidated report at the end of the internship
The intern is expected to have experience in the following areas:
1) Basic wet laboratory skills
2) Animal care procedures
3) Molecular biology techniques such as RNA isolation and DNA isolation
4) Basic knowledge of UNIX and soft skills (considered advantageous)
Overall, the intern should be proactive, eager to broaden their interests and meet with the principal investigator every two weeks to discuss research progress.
BioScience
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Red Sea Research Center
Coral reef ecology in a changing environment
Program:
Marine Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Maggie Johnson
Coral reefs are ecologically important ecosystems that are threatened by local human impacts, such as nutrient pollution and overfishing, and by global environmental change, such as ocean acidification and ocean warming. As a result, coral reefs have been in decline across the planet. In order to understand the future for coral reefs in the Red Sea, we must first understand the current status of reefs along the coast of Saudi Arabia, and then identify potential impacts of various environmental stressors. The goal of this project is to contribute to the broader research goals of the Global Change Ecology lab at KAUST, under the supervision of Professor Maggie Johnson.
We are seeking students interested in studying coral reef community structure and function in present day conditions, monitoring how reefs in the Red Sea are changing over space and time, and contributing to field and lab experiments that aim to identify impacts of different environmental stressors on key reef species. This research presents the opportunity to develop projects tailored to the specific interests of students. Examples of possible projects include, but are not limited to, quantifying the cover and health of corals and algae on central Red Sea coral reefs, deploying instruments and analyzing data to evaluate variability in important environmental parameters (temperature, pH, dissolved oxygen), and conducting targeted field and lab experiments to identify effects of warming temperatures (or changing pH or dissolved oxygen) on calcifying algae and corals. This is an exciting opportunity to contribute to ongoing work and to develop new research projects in the area of human and environmental impacts on coral reefs. The Global Change Ecology lab is committed to building an inclusive community and research environment and encourages applicants from all walks of life.
BAS/1/1102-01-01
lucia.bravo@kaust.edu.sa
Red Sea, Coral Reef, Ecology, Marine Science, Global Change, Human Impacts, Coral, Seaweed, Ocean Acidification, Ocean Warming, Deoxygenation, Overfishing, Nutrient Pollution
Marine Science, Benthic Ecology, Coral Reef Ecology, Phycology
The student is expected to contribute to the research goals of the project, and to lead or participate as a co-author in a peer-reviewed scientific publication.
Marine Science
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Red Sea Research Center
Deep Learning for Visual Computing (Computer Vision, Machine Learning, Graphics)
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Wonka
The internship will be in the area of visual computing (computer vision, machine learning, computer graphics). The exact topic depends on the student's interest, student's background, and current research topics in the group. Many projects in the group deal with generative modeling and 3D reconstruction. For example, adversarial networks for synthesizing images, textures, point clouds, and 3D geometry; Generative diffusion models for synthesizing images, 3D, and animations; depth from a single image; image segmentation; primitive fitting; indoor room layout reconstruction; domain adaptation; few shot learning;
BAS/1/1630-01-01
peter.wonka@kaust.edu.sa
Deep Learning; Machine Learning; Computer Vision; Computer Graphics; 3D Reconstruction; Generative Modeling;
Computer Vision, Machine Learning, Computer Graphics
There are no pre-determined deliverables. The goal is to learn more about the research process and to work towards a high-quality publication. Students will be involved in reading literature, discussing ideas, and implementation.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Safety-Guaranteed Planning and Control for Autonomous Underwater Robots
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Shinkyu Park
With 2000km of coral reef and marine life surrounding it, the Red Sea is a rich and diverse ecosystem. Due to its ecological and economic importance, persistent monitoring of its key areas is critical for marine biology research, economic development, and environmental protection. However, long-term survey and observation of extensive marine environments are extremely labor-intensive and hence require new technological development.
There have been a numerous efforts made in research and development of robots designed to autonomously survey and collect data in remote areas that are hard to access by human divers or require long-term and repeated monitoring. However, there remain technical challenges in implementing long-term autonomy in underwater robotics to allow a robot to navigate in close proximity of marine lives over an extended period of time while ensuring absolute safety and not interfering with their natural habitats.
In this project, we explore learning-based planning/control approaches that combine optimization-based design and data-driven machine learning methods. Leveraging the optimal feedback control and reinforcement learning, we aim to develop a framework that enables the robot to 1) learn how the environmental characteristics (light condition, current speed, etc.) affect its navigation performance and 2) adaptively revise its control policies to safely and graciously navigate around marine habitats.
BAS/1/1695-01-01
shinkyu.park@kaust.edu.sa
Robotics, Feedback Control Systems, Optimization, Machine Learning
Robotics, Feedback Control Systems, Optimization, Machine Learning
We adopt computational methods from optimization and reinforcement learning to design libraries that allow robots of various types to safely navigate in underwater environments for automated data collection applications. The students are expected to collaborate with the lab members to explore creative ideas and implement them on the underwater robot being developed in the robotics lab at KAUST. To fulfill the requirements of the project, the students are expected to have experience working with robotic systems/software and confidence in Python programming. Software library design and experiment reports are expected to be delivered at the end of the internship program.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Dexterous Robot Manipulation using Physics Engine
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Shinkyu Park
With the advance in sensing, actuation, and mechanical design, the robots are becoming more capable of performing complex and high-precision tasks ranging from autonomous driving in urban cities to handling packages in fulfillment centers. Control and planning of robot motion in real-world environments require high-fidelity models to simulate how the robot's motion impacts physical objects before they take action. Many well-established approaches in robotics rely on mathematical models due to their analytic tractability; however as robotic systems become complex and are required to interact in physical environments, we face limitations in finding analytically tractable models and begin to resort to new models that leverage the powerful computational resources embodied in robotic systems. To address the challenges in robot operation in physical environments, in this project, we explore the idea of building computational models based on physics engines and design feedback algorithms to autotune parameters of the model whenever the robot detects the discrepancy between the simulation and its experience in the physical world -- to reduce the sim-to-real gap. As key applications, we imagine to apply outcomes of the project to enable robotic manipulators to carry out the tasks in assembly lines and research laboratories that are labor-intensive and require dexterous skills.
BAS/1/1695-01-01
shinkyu.park@kaust.edu.sa
Robotics, Physics Simulation, Feedback System Design, Computer Science
Electrical and Computer Enginnering
This project aims to adopt a physics engine to build computational model and examine the fidelity of the model through experiments with manipulators in the robotics lab at KAUST. The students are expected to collaborate with the lab members to explore creative ideas and implement them on physical robotic systems. To fulfill the requirements of the project, the students are expected to have experience working with robotic systems/software and confidence in Python programming. The model design and experiment reports are expected to be delivered at the end of the internship program.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Siliciclastics in Al Wajh carbonate lagoon
Program:
Earth Science and Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Volker Vahrenkamp
Afro-Arabian desert belt export at least half of the world's dust. Dust provides essential minerals for life to thrive on Earth, both on land and in the sea. Dust provides iron to the ocean, which is one of the main limiting nutrients for photosynthetic algae. However, not much is known about how much dust is necessary to fertilize the ocean.
The aim of the project is to analyze dust particles within marine sediments from Al Wajh lagoon, NE Red Sea. A sedimentological, mineralogical, and spatial analysis will be performed.
BAS/1/1399-01-01
manueleduardofuentes@kaust.edu.sa
Siliciclastics; Dust; Carbonate Platforms
Geoscience
-SEM, XRD and grain size analysis of dust in marine sediments.
-A scientific report showing the results and interpretation of the measurements performed.
Earth Science and Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Ali I. Al-Naimi Petroleum Engineering Research Center
Engineering an isothermal amplification strategy for ultrasensivite and quantitative detection of microRNA cancer biomarkers
Program:
BioEngineering
Program:
Materials Science & Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Dana Alsulaiman
MicroRNA (miRNA) are short (~22 nt) non-coding RNA that have emerged as highly promising diagnostic and prognostic biomarkers due to their gene regulatory functions and dysregulated expression profiles in many diseases including cancer. While promising, their absolute quantification is challenging due to their short lengths, low circulating concentrations, and high sequence homology among family members. The gold standard method for miRNA detection, based on reverse-transcription qPCR, involves complex multistep procedures and requires thermal cycling, trained personnel and bulky equipment. This project aims to develop a novel quantitative and isothermal strategy for ultrasensitive detection of miRNA at the point-of-care, i.e. in a simple, cost-effective and efficient manner from minute volumes of a patient's biological fluid sample. This project will include advancements in biomolecular engineering, biomaterials development, and biochemistry. Ultimately, this project will lead to the development of highly sensitive point-of-care biosensors for cancer diagnosis, prognosis or monitoring based on multiplex detection of microRNA cancer biomarkers from a minimally-invasive 'liquid biopsy' test.
BAS/1/1426-01-01
erol.hasan@kaust.edu.sa
microRNA, cancer, diagnostics, biosensing, biomarkers
Bioengineering and Material Science
The aim of the project will be to deliver the following main objectives:
- Develop an isothermal amplification methodology and strategy for miRNA detection
- Characterize the analytical performance of the developed assay (sensitivity, specificity, dynamic range, etc)
- Optimize the analytical performance and validate the assay with synthetic and clinical samples
- Submit a report on the preliminary results which will be used as a platform for a peer-reviewed research article
BioEngineering
Physical Sciences and Engineering
Graduate or Undergraduate
Unraveling the molecular basis of immune signaling
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Stefan Arold
All animals and plants form ‘holobionts’ with a myriad of microorganisms. Accordingly, all organisms have evolved sophisticated immune mechanisms to fight pathogenic microbes, while attracting and nurturing beneficial ones. We use biochemistry, biophysics and structural methods such as X-ray crystallography, small angle X-ray scattering, nuclear magnetic resonance, cryo-electron microscopy and AI-based predictions to reveal the 3D structure of protein complexes involved in controlling the immune system. The student will be embedded in a team of structural biologists and will work on protein production, biophysical and 3D structural analyses. In KAUST we have access to state-of-the art instruments, including last-generation TITAN KRIOS electron microscopes, and high-field NMR; X-ray analysis is performed in France. Prior wet-lab experience would be a plus.
BAS/1/1056-01-01
Stefan.Arold@kaust.edu.sa
3D protein structures; immune system; protein production; biophysical and 3D structural analyses; NMR; electron microscopy
Structural Biology
The student will be embedded in a team of structural biologists and will work on protein production, biophysical and 3D structural analyses.
BioScience
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Protein Synthetic Biology
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Stefan Arold
The StruBE synthetic biology team is harnessing the power of proteins to forge innovative tools for biotech and medical applications. We are collaborating with material scientists and chemists to embed our designer proteins in novel materials or bioelectronic circuits. Ongoing projects include the design of next-generation biosensors, smart drugs, targeted therapeutic protein degrading systems, and designer enzymes for industrial applications. This entails experimental and computational work as well as the development of robotic liquid handling workflows. On the experimental side, a prospective student will be involved with protein production from E. coli or mammalian cell culture and the biophysical characterization of protein-protein interactions or enzymatic (whole-pathway) reactions. Prior wet-lab experience is a plus. A computational project in support of protein design and lab automation would require prior knowledge in Python programming. Hence, the interdisciplinary projects can host students from various backgrounds, e.g. from biochemistry, (bio)engineering, protein structural biology, or computer science.
BAS/1/1056-01-01
Stefan.Arold@kaust.edu.sa
structural biology; synthetic biology; protein design; bioelectrics & biosensors; computational biology; Python
Synthetic Biology
*protein production from E. coli or mammalian cell culture and the biophysical characterization of protein-protein interactions or enzymatic (whole-pathway) reactions.
*A computational project in support of protein design and lab automation would require prior knowledge in Python programming.
BioScience
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Characterization of IL11-deficiency in humans
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Bruno Reversade
The student will investigate patients with germline homozygous variants in the cyokine IL11.
He/she will make use of patient-derived fibroblasts and serum to confirm the pathogenicity of identified mutations and examine its downstream effects on cellular activity.
Additionally, an animal model may be envisaged in collaboration with European group and new clinical assays may required to better define syndrome.
This falls under the Smart Health Initiative towards the understanding of monogenic diseases.
This may become a part of a PhD project.
I don't know what this is ?
bruno.reversade@kaust.edu.sa
IL11, fibrosis, Mendelian diseases
human genetics
literature review and knowledge of IL11 pathway
cell culture with patient and established cell lines
signalling assays including Elisa, western blots, QPCR, immnuoflorescence, metabolomics
biomarker analysis in serum and supernatants
animal modeling
clinical analysis and comparison
clear communication at lab meetings and project report
BioScience
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Trees, Algebras, and Differential Equations: Extending the B-series.jl package for numerical analysis of initial value problems
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
David Ketcheson
The bseries.jl software package (https://ranocha.de/BSeries.jl/stable/) is designed to facilitate analysis of numerical methods for initial value problems, by utilizing the relationship between Taylor series, rooted trees, and Hopf algebras. It implements a range of graph-based algorithms that enable the study of errors in numerical methods, for instance revealing how the energy of the approximated system will evolve. It also allows for the design of novel methods. Its current functionality is primarily focused on Runge-Kutta methods.In this project we seek to extend the capabilities of bseries.jl to new classes of methods and/or new kinds of analysis. There are a number of possible directions and the specific one chosen will depend on the interests and knowledge of the student. Possibilities include extensions to:- Multi-derivative methods
- Partitioned methods (e.g. for Hamiltonian systems)
- General linear (multistep, multistage) methods
- Exponential methods
- Alternative bases for order conditions
- Application of simplifying assumptions in method design
- Generalized additive Runge-Kutta methods
- Characterization of energy-preserving B-series
- Extensions of B-series, such as aromatic B-series, exotic B-series, and S-series.Additional topics and references for some of these topics can be found at https://github.com/ranocha/BSeries.jl/issues/8.
BAS/1/1616-01-01
david.ketcheson@kaust.edu.sa
Applied Mathematics and Computer Science
Applied Maths and Computer Science
To be discussed in interview with applicant
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Extreme Computing Research Center
Seawater Reverse osmosis (SWRO) pretreatment impact on microbial growth potential
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
The desalination of seawater using reverse osmosis membranes (RO) is an attractive solution to global freshwater scarcity. However, membrane performance is reduced by (bio)fouling. Considering that (i) the global production of desalinated seawater by RO is at 65.5 million m3/d, (ii) a membrane single membrane production capacity of 12 m3/d, and (iii) an average membrane replacement rate of ~10% to 15% per year due to fouling, then about 825000 membranes go to waste every year worldwide. Among the fouling types, biofouling –membrane deposition of bacterial cells and subsequent microbial growth– is the most difficult to alleviate. The lifetime of RO membranes would be extended if seawater pretreatment units, prior to RO, efficiently removed the material causing biofouling. The problem with pretreatment in desalination plants is that we lack a robust biological-based method to assess their efficiency to remove biodegradable nutrients and microbial cells. Current methods to assess the quality of seawater entering the RO such as turbidity and silt density index do not inform the water’s microbial growth or biofouling potential; hence the performance of the receiving RO membrane is jeopardized.
FCC/1/1971-42-01
luca.fortunato@kaust.edu.sa
Desalination; biofilm; biofouling; Reverse Osmosis;
Environmental science and engineering
This research will develop a biological-based monitoring system based on microbial and biofilm growth potential to determine the efficiency of filtration pretreatment processes. The idea is to develop and implement a sensitive method to assess the microbial and biofilm growth potential SWRO pretreatment units.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Water Desalination and Reuse Center
ClO2 for biofouling control in Seawater Reverse Osmosis
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
It is desirable to apply a disinfectant for biofouling control in the membrane elements as well as in the intake system of seawater reverse osmosis (SWRO) plants. Chlorine dioxide (ClO2) would be an ideal candidate, since it is a highly effective disinfectant, does not produce chlorinated disinfection by-products, and as a dissolved gas it easily passes the membrane, allowing disinfection of the permeate side. Compared to chlorine and chloramine, ClO2 is a less aggressive oxidant, however, it has a higher oxidizing capacity. Polyamide membranes are known to be easily damaged by oxidants, and the potential for membrane damage is hampering the application of ClO2 in reverse osmosis. The presence of bromine, relatively high pH and high temperature, suggests that in Middle East, it is a serious possibility that membrane damage occurs in SWRO. Conversely, it is highly likely that ClO2 dosing is effective against biofouling, since it is an effective disinfectant and it can easily be transported into the biofilm and through the membrane.
FCC/1/1971-42-01
luca.fortunato@kaust.edu.sa
Desalination; Chlorination; biofouling; disinfection;
Environmental science and engineering
The main objective is to evaluate the potential membrane damage due to ClO2, and the second objective is to evaluate the effect of ClO2 on fouling.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Water Desalination and Reuse Center
Tackling the challenges of NO-Laser Induced Fluorescence technique in hydrogen detonation
Program:
Mechanical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Deanna Lacoste
Compared to classical constant volume or constant pressure thermodynamic cycles, the detonation regime of combustion could increase by 40% the efficiency of engines. In line with the Paris agreement, identifying more efficient combustion processes is one of the strategies to limit CO2 emissions that contribute to climate change. For transportation, researchers focus on obtaining and controlling a self-sustained detonation in a specific engine (PDE or RDE).
While the measurement of temperature and chemical species is of current practice in conventional combustion process (flames, engines, etc…), the experimental characterization of detonation relies on the determination of the detonation velocity, global pressure, and density gradient structure. These information are limited to validate numerical simulations and to be confident in the phenomenological comprehension extracted from it. While planar laser-induced fluorescence of hydroxyl radical (NO-PLIF) is a powerful technique to characterize reaction fronts, previous studies have shown significant limitations of this technique for detonation visualization. Not only restricted to reaction front visualization, this technique is also of interest as it can give access to 2-D temperature measurements in detonations.
Objectives: The main objective of the project is to overcome the current limitations of the NO-PLIF imaging of detonation. This numerical investigation is based on a preexisting PLIF model that will be used (i) to identify the sensitive parameters (excitation line, laser energy, gas composition, etc…) of the PLIF intensity and (ii) to recommend experimental conditions to maximize the overall image quality.
BAS/1/1396-01-01
mhedine.alicherif@kaust.edu.sa
Detonation front; Laser diagnostics; Numerical simulations; Spectroscopic analysis
Combustion; shock waves
First, the student will have to become familiar with the principle of the NO-PLIF technique and the particularities associated with its usage on detonations, which has high pressure and temperature variations, high-speed flow (up to 2000m/s), etc… Second, the sensitivity analysis of the fluorescence signal will be conducted to identify the most sensitive parameters of the PLIF signal. Third, optimal operating conditions (≠ maximizing the fluorescence signal) will be identified and tested experimentally. Due to both the strong non-linearities between the PLIF signal intensity and each parameter involved, machine-learning approaches may be used to facilitate the identification of the optimal operating conditions.
Mechanical Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Clean Combustion Research Center
Scaling Graph Neural Networks to 1000s of GPUs
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Panagiotis Kalnis
Graph Neural Networks (GNNs) are a special type of deep neural networks that deal with graphs, instead of the more traditional images. GNNs are used in a variety of applications, from recommendation systems, to social networks, to computer security, to biological networks. The common characteristic is that graphs tend to be large and complex; therefore both training and inference require significant processing power.
The goal of this project is to scale GNN training to thousands of GPUs. We will target our new supercomputer, Shaheen III, which is projected to include 2800 Nvidia Hopper super-chips than combine a CPU with a H100 GPU https://www.nextplatform.com/2022/09/26/kaust-hpe-shaheen-iii-supercomputer
We will use the latest frameworks, such as Microsoft DeepSpeed, and we will target very large graphs.
BAS/1/1603-01-01
panos.kalnis@kaust.edu.sa
Deep Neural Networks; DNN; Graph Neural Networks; GNN; High Performace Computing; HPC
Machine Learning
- Tensorflow or PyTorch - based implementation
- Project report
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Extreme Computing Research Center
Egocentric Video Understanding
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Bernard Ghanem
Have you ever imagined having a robot that cooks every meal for you? Have you ever dreamt about experiencing a different world in the Metaverse? Have you ever expected to have your glasses tell you where you left your keys and how to navigate to your favorite restaurant step by step? If yes, egocentric video understanding is what can lead you there.
Egocentric videos are videos recorded from the first-person point of view, with the camera mounted on the head (e.g., GoPro) or smart glasses worn alongside the eyes (e.g., Google glasses), and they are what you actually see in your eyes. We need the AI system to automatically analyze and understand this type of videos to achieve the goals mentioned above. There are two key aspects in this problem: 1) large egocentric video data to fuel AI solutions; 2) effective techniques to generate correct predictions.
For the first aspect, our IVUL group has devoted two years’ effort, together with 12 other universities as well as Meta (formerly Facebook), to achieve the largest egocentric video dataset called Ego4D. It contains 3000+ hours of egocentric video, spanning hundreds of scenarios captured by nearly 1000 unique camera wearers. Ego4D also defines various research tasks for egocentric video understanding, ranging from querying past memory, interpreting current behaviors, and forecasting future tendencies. For example, given a sentence “where and when did I last see my keys?”, the AI system returns the most recent video clip showing where your keys are. Or, the AI system automatically summarizes the video by telling you who is talking and what is his/her main point. Or the AI system predicts where you are walking to and what you are doing in the following minutes or even hours.
For the second aspect, though Ego4D contains baseline solutions to each task, these solutions are far from practical for real-world application. There are two main challenges here. First, current solutions adopt techniques from video understanding tasks for third-person videos (where activities are recorded from a “spectator” view), which are dramatically different from egocentric videos in terms of recording perspective, camera motion, video continuity, etc. As a consequence, representations learned from third-person videos are not optimal to represent egocentric videos. We need to investigate novel feature representations specific to egocentric videos, or explore ways to smartly transfer the knowledge from third-person videos to egocentric videos. Second, egocentric videos pose new challenges for conventional methods due to their characteristics, such as noisy head motion, long videos and fragment actions. We need to address these challenges and improve the performance with novel techniques.
In a nutshell, Ego4D is putting an apron on the robot and knocking on the door of the Metaverse, while at the same time, it is unveiling fresh challenges, which AI researchers are the key. It’s time to hop on board and contribute to this grand effort!
BAS/1/1653-01-01
bernard.ghanem@kaust.edu.sa
egocentric video; video understanding; computer vision;
Computer Vision; Machine Learning
(i) Effective feature representations of egocentric videos that benefit downstream tasks of egocentric videos, such as episodic memory, future anticipation;
(ii) Novel techniques to transfer/translate between egocentric videos and exocentric videos;
(iii) Improvement to retrieve ‘moments’ from past videos using a category, sentence or an object; (iv) Improvement to identify speaking faces in an egocentric video and summarize the speech.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Visual Computing Center
Next Generation Continual Learning
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Bernard Ghanem
One of the most impressive abilities of human beings is the incremental learning ability. Since birth, we are always learning continuously without forgetting previously acquired knowledge that is useful for us. Could you imagine the amount of real-world applications that could be developed if we extended this human ability to modern-day AI systems (especially deep neural networks)?
Modern deep neural networks adapt their parameters based on large-scale datasets to achieve state-of-the-art performance on specific computer vision tasks. However, due to legal and technical constraints and huge label diversity, deep learning models in real-world scenarios would rarely be trained just once time. Instead, they could be trained sequentially in several disjoint computer vision tasks without considering the data from previous tasks (because it may no longer be available for example). Therefore, these networks should learn incrementally without forgetting the previously learned knowledge. This is known as Continual Learning (CL). Currently, there are two families of CL methods. The first is rehearsal or memory-based methods, which select and store the most relevant samples to remember the current task when the following tasks are learned. The second group involves regularized methods that penalize changes to the most relevant parameters for the previous tasks.
While the main studied challenge in the literature is learning with the least amount of forgetting on previous tasks, there are several other unexplored factors that affect learning from a stream of data. For instance, How fast is the learner in adapting the parameters of the model when receiving a new batch of data? If the learner is too slow (expensive training routine), then samples from the stream could be missed and not trained on. Thus, how can we benchmark different continual learning methods under budget constraint training?
Furthermore, most continual learning benchmarks are focusing solely on the image domain leaving the more challenging video data unstudied. In the video domain, one of the main issues has been the lack of realistic, challenging, and standardized evaluation setups, making direct comparisons hard to establish. Therefore, our group IVUL has developed vCLIMB, a novel video class incremental learning benchmark, to promote and facilitate research on continual learning in the video domain. Video CL comes with unique challenges. (1) Memory-based methods developed in the image domain are not scalable to store full-resolution videos, so novel methods are needed to select representative frames to store in memory. (2) Untrimmed videos have background frames that contain less helpful information, thus making the selection process more challenging. (3) The temporal information is unique to video data, and both memory-based and regularization-based methods need to mitigate forgetting while also integrating key information from this temporal dimension.
BAS/1/1653-01-01
bernard.ghanem@kaust.edu.sa
continual learning; online learning
machine learning; computer vision
(i) A novel memory sampling strategy that learns to select a different number of relevant frames per video to reduce memory consumption while the performance remains almost the same;
(ii) Novel training techniques/schemes to reduce forgetting.
(iii) Benchmarking different continual learning methods on more practical metrics.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Visual Computing Center
Graph Neural Networks for Science and Engineering
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Bernard Ghanem
Lots of data in scientific and engineering applications come with natural graph structures such as molecules in Chemistry, proteins in Biology, particles in Physics, planets in Astronomy, Bulk and MOF materials in Material Science, social and citation networks in Data Science, point clouds and meshes in Computer Vision and Graphics and so on. To model the information of such objects with complex structures, Graph Machine Learning, especially Graph Neural Networks (GNNs), has been proven as one of the most promising tools. Graph neural networks are deep learning architectures that can be trained to represent graphs with node features and edge features. For example, a molecule can be represented by a graph, where each atom is a node in the graph, and each bond is an edge. The atom numbers and types of chemical bonds are the associated node and edge features respectively. A GNN model can be trained to predict the quantum properties by learning on density functional theory (DFT) datasets which has huge potential to advance scientific discovery.
Our group at IVUL have developed methods for graphs in 3D vision, videos, data mining, and fundamental science. We have developed GNNs with more than 100 layers with DeepGCNs (ICCV’2019, TPAMI’2021), and PU-GCN (CVPR’2021) for 3D point clouds segmentation and generation, G-TAD (CVPR'2020), VLG-Net (ICCVW’2021), MAAS (ICCV’2021) and VSGN (ICCV’2021) for large-scale video understanding, and DeeperGCN (arXiv’2020), 1000-layer GNN (ICML’2021) and FLAG (CVPR'2022) for node, link and graph level property prediction on Open Graph Benchmark (OGB) datasets which have graphs span nature, society and information domains.
Are you excited about working on complex graph-structured data to make advances in biology, chemistry, physics, computer science, and so on? Would you like to use artificial intelligence to make fast predictions about the 3D structure of molecules, thereby speeding up the drug discovery process? Are you motivated by applications to precision medicine, and would like to create AI that learns to recommend what specific drug is suitable for a particular patient? Or perhaps you are more interested in higher-level abstractions, and would like to build an AI-based partial differential equation solver. All of these complex problems can be modeled through graph-structured data, and research in Graph Neural Networks can bring us closer to solving them. GNN has untapped potential in tackling graph based problems in Science and Engineering. However, more work is needed to explore the unique challenges to each scientific domain. In this project, you will have the chance to learn how to build large-scale graph neural networks and apply them to scientific and engineering applications.
BAS/1/1653-01-01
bernard.ghanem@kaust.edu.sa
graph neural networks
machine learning, AI for science
(i) Identifying the ground challenges of graph based problems in Science and Engineering;
(ii) Collecting or processing the desired data into graph formats;
(iii) Proposing novel GNN architectures and training techniques to tackle the challenges of learning on these graph data;
(iv) Training and evaluating the proposed methods on specific metrics;
(v) Producing well-performing and reproducible results and releasing the modular and reusable codebase to the research community.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Visual Computing Center
Next Generation 3D Understanding
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Bernard Ghanem
We are living in a 3D world. A broad range of critical applications such as autonomous driving, augmented reality, robotics, medical imaging, and drug discover rely on accurate representation of the three-dimensional data. While enormous efforts have been devoted to images and languages processing, it is still at an early stage to apply deep learning to 3D, despite their great research values. Here, we launch the project of next generation 3D understanding, and want to appeal more young talents like you to make this happen.
We are particularly interested in two topics of the next generation 3D understanding: 1) a large-scale pretrained foundation 3D understanding model; 2) a vision generalist model that connects 2D and 3D vision data such as images, point clouds, and RGB-D. For the first topic, you might have heard that the trillion-parameter AI language model Switch Transformer by Google Brain excels across nature language processing tasks, and you might also know about the recent model Imagen with over 2 billion parameters can produce Photorealistic images from texts. Both of them are great examples of the power of large-scale models. Unfortunately, in 3D understanding, even the largest well-known network is still with less than 100 million parameters. How to increase the scale of 3D models in order to further unveil the power of deep learning in 3D application is a promising research direction. For the second topic, as a human, we can understand vision data despite its modality (2D or 3D). It is a step towards general artificial intelligence in computer vision to propose a single model that is able to have all knowledge about vision including 2D (images, videos), 3D (point clouds, RGB-D). This is an interesting topic but is under explored in the community.
Our group at IVUL has put tremendous efforts and gained significant achievements in both topics. For the large-scale pretrained foundation model, our group is the first in the world that successfully trained a model with over 100 layers that achieved state-of-the-art performance in 2019 (DeepGCNs-ICCV19’). We broke our own record to 1000 layers in 2021 (GNN1000-ICML21’). Recently, we also propose scalable 3D networks with high inference speed in 2020s (ASSANet-NeurIPS21’, PointNeXt-arXiv22’). For the vision generalist model, our group has published impactful papers that involve understanding both view-images and point clouds (MVTN-ICCV21’, VointCloud-arXiv21’). Moreover, we have multiple ongoing projects in both directions. If you want to become a part in next generation 3D understanding, do not hesitate to join this project and achieve more with us!
BAS/1/1653-01-01
bernard.ghanem@kaust.edu.sa
3D computer vision
3D computer vision
(i) proposing a new large-scale foundation model for 3D understanding;
(ii) proposing self supervision techniques for training large-scale 3D models with limited data;
(iii) proposing novel generalist vision models that are able to tackle both 2D and 3D understanding;
(iv) proposing novel techniques for training this cross-modality generalist vision model.
All Programs
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Visual Computing Center
Enzymatic Synthesis – Enzyme Characterization and Cascade Engineering
Program:
BioScience
Faculty Name:
Magnus Rueping
Biocatalysis has found numerous applications in various fields as a green and sustainable alternative to chemical catalysis. The potential of using enzymes in organic synthesis is high, especially to make chiral compounds for pharmaceuticals. The project focuses on the expression, purification and characterization of various enzyme classes for different synthesis targets. The enzymes will be tested alone or in combination in aqueous catalysis reactions and the influence of composition on selectivity and reactivity will be studied.
Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
dominik.renn@kaust.edu.sa
Biocatalysis, Enzymes, Cascade Engineering, Enzyme Characterisation
Biochemistry
Students shall extend their general knowledge and skills in molecular biology and protein biochemistry. An emphasis will be put on expression, purification and characterization techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
BioScience
All Divisions
Graduate or Undergraduate
KAUST Catalysis Center
Biocatalytic Amine Synthesis
Program:
BioScience
Faculty Name:
Magnus Rueping
Enantiomerically pure chiral amines are valuable building blocks for the synthesis of various compounds such as pharmaceutical drugs or agrochemicals. Biocatalytic amine synthesis allows a cost-effective and sustainable preparation of chiral amines in enantiomerically pure form. The project aims for the identification, engineering and application of new amine forming enzymes to biocatalytic retrosynthesis and new enzyme cascades.
Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
dominik.renn@kaust.edu.sa
Biocatalysis, Enzymes, Cascade Engineering, Amines
Biochemistry
Students shall extend their general knowledge and skills in molecular biology and protein biochemistry. An emphasis will be put on expression, purification and characterization techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
BioScience
All Divisions
Graduate or Undergraduate
KAUST Catalysis Center
The Development of Organic Transformations via Photocatalysis
Program:
BioScience
Program:
Chemistry
Faculty Name:
Magnus Rueping
Over the past few years, the field of photocatalysis has demonstrated its potential to drive complicated chemical reactions under mild conditions using visible-light as an energy source and inexpensive, bench-stable substrates as feedstocks. Our group has been focused on the development of photocatalyzed organic transformations via diverse pathways including single electron transfer (SET), energy transfer (ET), photo-excited metal cross-coupling, electron-donor-acceptor (EDA) complex. Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
chen.zhu@kaust.edu.sa
Photocatalysis
Chemistry
Students shall extend their general knowledge and skills in chemistry and photocatalysis. An emphasis will be put on characterisation techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
BioScience
All Divisions
Graduate or Undergraduate
KAUST Catalysis Center
Electro-catalyzed C-C and C-X bond cross-couplings
Program:
Chemistry
Division:
Physical Sciences and Engineering
Faculty Name:
Magnus Rueping
The development of sustainable and scalable catalytic methodologies to access structurally diverse organic compounds is a long-term aim for organic chemists. In this regard, organic electrocatalysis has been developed as an attractive catalytic platform making use of renewable electricity instead of stoichiometric oxidants or reductants. We are focusing on the construction of new C-C and C-X bonds and their mechanistic studies under electrochemical conditions with or without the aid of metal catalyst. Project-duration will be 3-6 month, details of arrival/departure dates to be discussed.
BAS/1/1385-01-01
chen.zhu@kaust.edu.sa
Electro-catalyzed, C-C bond formation, C-X bond cross-couplings, Electrocatalysis
Chemistry, Electrocatalysis
Students shall extend their general knowledge and skills in chemistry, and electrocatalysis. An emphasis will be put on electrocatalysis steps and techniques. Students will be taught to work independently on projects, yet strengthening their critical sense to develop new ideas. In the course of the internship students shall demonstrate this understanding during oral presentations and one final written report.
Chemistry
Physical Sciences and Engineering
Undergraduate
KAUST Catalysis Center
Iproved oil recvery from carbonates
Program:
Energy Resources and Petroleum Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Tadeusz Patzek
Perform flow experiments on limestone cores. Propare and age cores. Understand principles of fluid flow in proous media and some of he involved equipment
BAS/1/1780-01-01
ksenia.kaprielova@kaust.edu.sa
petroleum, IOR, carbonate, microporous, EOR, chemical flooding
Petroleum or chemical engineering
Report with experimntl results
Energy Resources and Petroleum Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Ali I. Al-Naimi Petroleum Engineering Research Center
Nanovisualization
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Ivan Viola
During the research internship students will learn about the nanovisualization technology which combines computer graphics and visualization for nano-structures in life sciences and biotechnology. Nanovisualization poses several new technological challenges that are not reflected in the state of the art computer graphics and 3D visualization as of today. The underlying domain requires new techniques for multi-scale, multi-instance, dense, three-dimensional models which we never subject of technological advances in 3D graphics before. These scenes are of gigantic sizes and unmatched complexity. Therefore the task in nanovisualization is to thoroughly revisit all technological aspects of rendering, visualization, navigation, user interaction, and modeling in order to offer algorithmic solutions that address new requirements associated with the nano and microscopic scales.Throughout their stay, students will be working in team with researchers on specific assignment for a particular scientific work or solving a technical challenge in the field of computer graphics and visualization. Nanovisualization is one of the key components in creating, studying, and understanding scale-wise small (but complex) systems. As such it will become a key technology in the upcoming industrial revolution that will be heavily associated with the nano scale.The benefit for the students is to get familiar with nanovisualization research field, which is worldwide uniquely offered at KAUST. They will be integrated in working on a very important problems so far untouched in graphics and visualization that are very relevant for many societal challenges from the health, food, and energy sectors.
ASP/1/1669-01-01
ivan.viola@kaust.edu.sa
Nanovisualization
computer science, applied mathematics, physics
Students should work on an internship project and should implement a clearly specified task. It is expected that students are familiar with computer graphics and visualization and can document advanced skills in graphics programming
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Visual Computing Center
Formation of hydrogen peroxide in water microdroplets
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Himanshu Mishra
Recent reports on the formation of hydrogen peroxide (H2O2) in water microdroplets produced via pneumatic spraying [1] or capillary condensation [2] have garnered significant attention. How covalent bonds in water could break under such mild conditions challenges our textbook understanding of physical chemistry and the water substance. While there is no definitive answer, it has been speculated that ultrahigh electric fields at the air-water interface are responsible for this chemical transformation. We are carrying out a comprehensive experimental investigation of H2O2 formation in (i) water microdroplets sprayed over a range of liquid flow-rates, the (shearing) air flow rates, and the air composition (ii) water microdroplets condensed on hydrophobic substrates formed via hot water or humidifier under controlled air composition. Our experimental results have challenged the putative claims of spontaneous H2O2 generation on the water surface [3, 4]. Additionally, new scientific questions along this theme have emerged that the VSRP intern will contribute to. References:
1. Lee, J. K.; Walker, K. L.; Han, H. S.; Kang, J.; Prinz, F. B.; Waymouth, R. M.; Nam, H. G.; Zare, R. N., Spontaneous generation of hydrogen peroxide from aqueous microdroplets. P Natl Acad Sci USA 2019, 116 (39), 19294-19298.
2. Lee, J. K.; Han, H. S.; Chaikasetsin, S.; Marron, D. P.; Waymouth, R. M.; Prinz, F. B.; Zare, R. N., Condensing water vapor to droplets generates hydrogen peroxide. P Natl Acad Sci USA 2020, 117 (49), 30934-30941.
3. Gallo Jr, A.; Musskopf, N. H.; Liu, X.; Yang, Z.; Petry, J.; Zhang, P.; Thoroddsen, S.; Im, H.; Mishra, H., On the formation of hydrogen peroxide in water microdroplets. Chemical Science 2022, 13 (9), 2574-2583.
4. Musskopf, N. H.; Gallo, A.; Zhang, P.; Petry, J.; Mishra, H., The Air–Water Interface of Water Microdroplets Formed by Ultrasonication or Condensation Does Not Produce H2O2. The Journal of Physical Chemistry Letters 2021, 12 (46), 11422-11429.5. Eatoo, M., Wehbe, N., Kharbatia, N., Guo, Xianrong, Mishra, H.*, “Why Some Metal Ions Spontaneously Form Nanoparticles in Water Microdroplets? Disentangling the Contributions of the Air-Water Interface and Bulk Redox Chemistry”, Chemical Science 2024, DOI: 10.1039/d4sc03217a6. Eatoo, M., Mishra, H.*, “Busting the Myth of Spontaneous Formation of H2O2 at the Air–Water Interface: Contributions of the Liquid–Solid Interface and Dissolved Oxygen Exposed”, Chemical Science 2024, 15, 3093-3103 (Journal Cover)
BAS/1/1070-01-01
peng.zhang@kaust.edu.sa
Physical Chemistry, Electrochemistry, Analytical Chemistry, Microfluidics, high-speed imaging, chemical kinetics
Physical Chemistry, Electrochemistry, Analytical Chemistry, Microfluidics, high-speed imaging, chemical kinetics
• The intern will conduct a comprehensive experimental investigation of H2O2 formation in (i) water microdroplets sprayed over a range of liquid flow-rates, the (shearing) air flow rates, and the air composition (ii) water microdroplets condensed on hydrophobic substrates formed via hot water or humidifier under controlled air composition. This will also entail a comparative assessment of the various H2O2 detection kits/assays available.
• Glovebox experiments will be deployed to quantify H2O2 formation in water microdroplets as a function of the air-borne ozone (O3) concentration.
• Effects of atmospherically relevant O3(g) concentrations (10–100 ppb) on the formation of H2O2(aq) will be evaluated.
• Effects of the gas–liquid surface area, mixing, and contact duration will be quantified.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Water Desalination and Reuse Center
Growth and characterization of 2D materials using sputtering
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Nazek Elatab
In this project, the student will be working on the growth of MoS2 using sputtering at different temperatures and characterizing them. The material will be later used in memory devices application.
BAS/1/1698-01-01
nazek.elatab@kaust.edu.sa
MoS2, sputtering, semiconductors, micro and nanofabrication
Electrical engineering, physics, solid-state devices, semiconductors, micro and nanofabrication
Growth of MoS2 using sputtering at different temperatures
Characterization of the material - XRD, XPS, Raman, UV-Vis-NIR spectroscopy, AFM
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Dissecting the molecular basis of the neurodevelopmental features associated with Klinefelter syndrome
Program:
BioEngineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Antonio Adamo
Klinefelter syndrome (KS) is the most common chromosome aneuploidy in humans. Our laboratory recently established a unique cohort of KS-iPSCs carrying 47,XXY, 48,XXXY, and 49,XXXXY karyotypes. We apply a disease-modeling approach to investigate the molecular basis of the neurodevelopmental features associated with KS during differentiation of KS-iPSCs into neurons using the most advanced brain-organoids differentiation methods.
The Laboratory of Stem Cells and Diseases is seeking an outstanding internship student to work on the study of the role of critical X-linked transcription factors. The selected candidates will combine human iPSC cultures and genome-editing (CRISPR-Cas9) techniques.
BAS/1/1077-01-01
Antonio.adamo@kaust.edu.sa
Disease-modeling, Brain-organoids, Stem Cells, iPSCs
Disease-modeling, Brain-organoids, Stem Cells
The candidate will successfully differentiate disease and healthy iPSCs into disease-relevant tissues applying the most advanced 3D brain-organoids differentiation techniques.
BioEngineering
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Integrated silicon photonics
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Yating Wan
Integrated silicon photonics has sparked a significant ramp-up of investment in both academia and industry as a scalable, power-efficient, and eco-friendly solution. At the heart of this platform is the light source, which in itself, has been the focus of research and development extensively. We tackle this from two perspectives: device-level and system-wide points of view. In the former, the different routes taken in integrating on-chip lasers are explored from different material systems to the chosen integration methodologies. In the latter, we seek system-wide applications that show great prospects in incorporating photonic integrated circuits (PIC) with on-chip lasers and active devices, namely, optical communications and interconnects, optical phased array-based LiDAR, sensors for chemical and biological analysis, integrated quantum technologies, and finally, optical computing. By leveraging the myriad inherent attractive features of integrated silicon photonics, we aim to inspire further development in incorporating PICs with on-chip lasers in, but not limited to, these applications for substantial performance gains, green solutions, and mass-production. In this VSRP program, students will have the opportunity to learn the latest device design and fabrication of the integrated silicon photonics chips, and explore the applications based on their own interests. The project needs 3-6 months to be completed. Successful students can likely publish their results in prestigious scientific venues and get enrolled in the Ph.D program in Integrated Photonics Lab.
BAS/1/1700-01-01
alkhazraji_e@jic.edu.sa
integrated Si photonics
photonics Engineering, Physics, Mathematics
The students are expected to acquire the basic knowledge of the design of the integrated silicon photonics chips, proficient skills of device designs using simulation tools, hand-on experimental experiences of optoelectronic device characterizations, and conference/journal publications.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Integration of reservoir simulation with deep learning for subsurface reservoir management
Program:
Energy Resources and Petroleum Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Bicheng Yan
DSFT is a research team with diverse expertise including numerical modeling, machine/deep learning and energy system management. We are dedicating to technology development of advanced physics-driven numerical simulation and data-driven modeling for fluid flow in porous media. The goal of this visiting student project is to develop reservoir models to simulate the process of geological carbon storage, geothermal recovery or hydrogen storage, and ultimately use deep learning (e.g., convolutional/recurrent/graphic neural networks) or physics-informed neural networks to establish surrogate models for fast prediction of these nonlinear processes, and ultimately be ready for application of uncertainty quantification and also optimization.
We seek for self-motivated, dedicated and creative students who wants to address challenging energy and environmental related engineering problems, whose majors are from petroleum engineering, computational mathematics, machine learning or closely related fields. Desired qualification will be competitive students with good skills of reservoir simulation, python or Julia programming and deep learning.
BAS/1/1423-01-01
bicheng.yan@kaust.edu.sa
Reservoir Simulation, pore-scale simulation, multiphase flow in porous media, deep learning
Petroleum Engineering, Computational Mathematics, Machine Learning
- report - prototype
Energy Resources and Petroleum Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Ali I. Al-Naimi Petroleum Engineering Research Center
Protein design based on AlphaFold2
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Xin Gao
AlphaFold2 has made the biggest breakthrough in computational biology and has created the hope to be able to not only solve the forward protein 3D structure prediction problem, but also target a more challenging but more practically useful inverse problem, protein design. Protein design is the core problem in protein engineering and optimization, with a very wide range of applications in enzyme optimization, antibody design, drug development, etc. This project is designed to leverage the power of AlphaFold2 to target the protein design problem through developing AI methods.
BAS/1/1624-01-01
xin.gao@kaust.edu.sa
Protein structure prediction, protein design, deep learning, AlphaFold
AI+Bioinformatics
An end-to-end learning pipeline for protein design.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate or Undergraduate
Computational Bioscience Research Center
3D printing of smart composites for wireless structural health monitoring
Program:
Mechanical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Gilles Lubineau
New composite infrastructure used for the energy transition (hydrogen energy, solar, wind) are facing enormous challenges when it comes to integrity and maintenance. We propose here to integrate within smart composites special sensing technologies, allowing the wireless control of these critical systems. The project will make large use of additive manufacturing at different scales.
BAS/1/1315-01-01
gilles.lubineau@kaust.edu.sa
composites, sensors, wireless monitoring, damage in composites
Composites, additive manufacturing, energy, structural integrity
- report
- prototype
Mechanical Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Identifying novel Cas variants for pathogen diagnostics
Program:
BioEngineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Magdy Mahfouz
Rapid, point-of-care (POC) diagnostics are essential to mitigate the impacts of current (and future) epidemics; however, current methods for detecting severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) require complicated laboratory tests that are generally conducted off-site and require substantial time. CRISPR-Cas systems have been harnessed to develop sensitive and specific platforms for nucleic acid detection. These detection platforms take advantage of CRISPR enzymes’ RNA-guided specificity for RNA and DNA targets and collateral trans activities on single-stranded RNA and DNA reporters. Microbial genomes possess an extensive range of CRISPR enzymes with different specificities and levels of collateral activity; identifying new enzymes may improve CRISPR-based diagnostics. We work to identify new Cas variants, and characterize its catalytic activity.
BAS/1/1035-01-01
norhan.hassn@kaust.edu.sa
Bioengineering, diagnostics, CRSIPR
Bioengineering
Training on different molecular biology techniques and comprehending the components and mechanisms of the CRSIPR-Cas systems.
BioEngineering
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Investigating the carrier dynamics of emerging wide band gap semiconductor for novel optoelectronic applications
Program:
Marine Science
Program:
Materials Science & Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Iman Roqan
Studying fundamental sciences is the key factor for technological development, as this allows the researchers to better understand the natural phenomena behind human discoveries. In the context of semiconductor innovation, for example, the physics principles of carrier recombination and the importance of quantum mechanics, including carrier quantum confinement, localization, and their effects on the carrier wavefunction, need to be studied in order to ensure efficient semiconductor-based devices. Mainly, technology based on wide bandgap semiconductors as high-energy optoelectronics based on these materials that operate at the deep UV and UV spectral ranges got scientists attention due to their use for many applications in different fields, such as medical treatment, astronomy investigations, material analysis, missile detection, space communications, security systems, and x-ray imaging.
Due to the lack of suitable substrates, the emitting devices still need further enhancement. For example, no commercial laser diode operates in the UV spectral range below 375 eV. Therefore, in this project, this issue will be addressed to enhance the emission of these materials. The project will focus on studying the fundamental physics of the carrier dynamics of wide-bandgap semiconductors such as III-nitrides and oxides. Several structures will be investigated experimentally and theoretically for developing wide bandgap semiconductor-based materials, one of which is carrier confinement using different novel approaches. The project goals will be achieved by employing time-integrated photoluminescence (PL) using CW lasers as well as time-resolved PL using ultrafast oscillators attached to streak camera or photon-counting detection systems. In addition, PL excitation will be used to understand the origin of the emitted light using a Xe lamp attached to a fluorescence system. The theoretical simulation of emitting devices will be carried out by analytical code, such as Lumerical.
BAS/1/1319-01-01
iman.roqan@kaust.edu.sa
Wide bandgap semiconductor, LED, laser diode, emitting devices, DUV
Optical spectroscopy of semiconductors
- Be familiar with advanced optical spectroscopy techniques
- Understanding the fundamentals of optical properties of semiconductor
- Understanding the carrier dynamics of semiconductor
- Achieving theoretical and experimental results of the novel semiconductor structure
- Analyzing the carrier dynamic outputs
- Finally, concluding the desired projects
Marine Science
Physical Sciences and Engineering
Graduate or Undergraduate
Safeguarding our daily bread from wheat rust diseases
Program:
Plant Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Brande Wulff
Wheat rusts are destructive diseases of wheat, which throughout recorded history have caused devastating epidemics almost wherever wheat is grown. The wild ancestors of domesticated wheat represent a rich source of genetic variation with huge potential for improving disease resistance. Deploying this genetic diversity into elite, cultivated wheat by traditional breeding takes many years for just a single resistance gene. However, the molecular identification (cloning) of resistance genes opens up new possibilities for accelerated breeding by marker-assisted selection and genetic engineering [Refs. 1,2]. The Wulff lab has established a suite of molecular plant breeding technologies that significantly reduce costs and accelerate plant growth [Refs. 3,4], gene discovery [Refs. 5,6,7,8,9] and gene cloning [Refs. 7,8,9,10]. You will use our tools, structured germplasm, and sequence resources to characterize novel candidate rust resistance genes. You will be supervised by Brande Wulff and receive training and co-supervision from a team of Postdocs and PhD students with expertise in bioinformatics, mathematics, scripting, genetics, plant pathogen interactions, wheat husbandry and crossing. KAUST is a vibrant place to discuss and plan science. You will become part of the larger KAUST community and alumni, which we hope will have lasting positive impacts on your future career.
References
[1] Dhugga & Wulff (2018). Science 361:451-452. [2] Luo et al (2021) Nature Biotechnology 39:561-566. [3] Watson et al (2017) Nature Plants 4:23-29. [4] Ghosh et al (2018) Nature Protocols 13:2944-2963. [5] Steuernagel et al (2015) Bioinformatics 31:1665-7. [6] Steuernagel et al (2020) Plant Physiology 183:468-482. [7] Arora et al (2018) Nature Biotechnology 2:139-143. [8] Gaurav et al. (2020) bioRxiv doi.org/10.1101/2021.01.31.428788. [9] Steuernagel et al (2016). Nature Biotechnology 34:652-5. [10] Sánchez-Martín et al (2016). Genome Biology 17:221.
BAS/1/1091‐01‐01
brande.wulff@kaust.edu.sa
Wheat, wheat rust, resistance genes, GWAS, bioinformatics, plant disease, cloning, food security
Plant genetics
Research experience including learning of one or more techniques employed in the lab, the generation of original data, design of figure(s), and presentation of results at lab meeting.
Plant Science
Biological and Environmental Sciences and Engineering
Graduate or Undergraduate
Center for Desert Agriculture
Design and 3D print a continuous flow reactor
Program:
Chemical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Carlos Grande
High-added value chemicals and active pharmaceutical ingredients (APIs) are normally produced using batch technology. Some of those chemical compounds can be produced in continuous flow reactors (i.e. continuous manufacturing).
Advanced techniques of manufacturing like 3D printing allow us to produce specific reactors that are optimized to produce a certain chemical or pharmaceutical component. Such novel designs are of importance when heat of reaction needs to be evacuated faster or when improved mixing is required, etc.
The current project aims to use digital tools to produce custom designs of continuous flow reactors. The student will also be involved in the production of the reactor and on its flow pattern characterization (determination of residence time distribution).
BAS/1/1420-01-01
carlos.grande@kaust.edu.sa
reaction: 3D printing: simulation: digitalization
reaction engineering ; transport phenomena ; digitalization
Learn how to produce novel designs and transform them into high quality meshes for 3D printing. Rhino3D and Grasshopper will be used for parametric geometry design.
Categorize the advantages, but also the limitations of 3D printing as a manufacturing tool for chemical reactors.
Understand residence time distribution concepts and participate in a joint scientific publication.
Chemical Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Advanced Membranes and Porous Materials Center
Modelling tools for advanced separation processes
Program:
Chemical Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Carlos Grande
Adsorption processes are emerging separation technologies that have the potential to cut energy consumption in many different separations vital to society. Differently from other separation technologies, adsorption processes are transient processes where the operation of a bundle of columns is synchronized to operate in an efficient manner.
Modelling the performance of adsorption processes involve the utilization of advanced modelling tools that will be learnt in this project. The student will learn how to develop a mathematical model for a given gas separation and to use gPROMS language as a tool to numerically solve this problem.
The main objective of this project is to learn how to model adsorption processes in general so there is plenty of flexibility in selecting the separation to be targeted.
BAS/1/1420-01-01
carlos.grande@kaust.edu.sa
adsorption: separation: 3D printing: simulation: digitalization
separation processes ; transport phenomena ; modelling
Learn to use gPROMS software and how to transform equation-based problems into computer code.
Understand the important variables that are important for simulation and optimization of adsorption processes.
Participate in a joint scientific publication.
Chemical Engineering
Physical Sciences and Engineering
Graduate or Undergraduate
Advanced Membranes and Porous Materials Center
Modeling Fluid Flow and Transport in Porous Media by Physics-driven Simulation Approaches
Program:
Energy Resources and Petroleum Engineering
Division:
Physical Sciences and Engineering
Faculty Name:
Bicheng Yan
The Digital Subsurface Flow & Transport Lab (DSFT-Lab) is a cross-discipline team led by Prof. Bicheng Yan KAUST. Currently DSFT focuses on physics-driven and data-driven (deep learning mainly) model development that can simulate multiphase flow in porous media at reservoir scale and pore scale. The goal is to explore the fundamental physics that governs the complex and coupled physics related flow and transport in porous media, and investigate its impact on subsurface fluid flow such as hydrocarbon recovery, geologic carbon sequestration, hydrogen storage and geothermal recovery etc.
DSFT seeks for self-motivated, dedicated and creative STEM-majored students who wants to address challenging energy and environmental related engineering problems.
BAS/1/1423-01-01
bicheng.yan@kaust.edu.sa
Reservoir Simulation, pore-scale simulation, multiphase flow in porous media, deep learning
Subsurface Modeling
* Subsurface modeling workflow/software for reservoir or pore scale modeling;
* 1 to 2 publications based on the scientific findings.
Energy Resources and Petroleum Engineering
Physical Sciences and Engineering
Undergraduate
Ali I. Al-Naimi Petroleum Engineering Research Center
Fully 3D Printed Flexible ECG Patch with Dry Electrodes
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Nazek Elatab
The project aims to design and develop a fully 3D Printed Flexible ECG Patch with Dry Electrodes. The student will work on the design and 3D printing of different conductive materials such as graphene and carbon nanotubes, and testing them as ECG dry electrodes. The student will be characterizing the reliability of the electrodes using a semiconductor device analyzer ad probe station, in addition to the endurance of the electrodes after performing several bending, twisting and stretching cycles.
BAS/1/1698-01-01
nazek.elatab@kaust.edu.sa
3D printing, ECG, flexible electronics
3D Printed Electronics
1- Design and 3D printing of ECG electrodes and substrate based on different materials combinations
2- Electrical (skin impedance) and mechanical testing of the electrodes (bending, stretching, and twisting cycling tests)
3- Testing of the comfort to the wearer
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Graduate
Efficient pricing of high-dimensional (multi-assets) European Options
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Raul Tempone
The student will work on designing new numerical methods based on hierarchical adaptive sparse grids quadratures combined with Fourier techniques for efficient pricing of high-dimensional (multi-assets) European Options. Specifically, the student will contemplate the possibility of finding a heuristic framework for an optimal choice of the integration contour (damping parameter) which controls the analyticity of the integrand in the Fourier space and hence accelerate the performance of the quadrature methods. He will also develop a systematic comparison between hierarchical deterministic quadrature methods, Tensor Product (TP) quadrature, Smolyak (SM) Sparse Grids quadrature, and Adaptive Sparse Grids (ASG) quadrature to numerically evaluate the option price under different pricing dynamics, Geometric Brownian Motion (GBM), Variance Gamma (VG) and Normal Inverse Gaussian (NIG) for different multi-asset payoff functions such as Basket Call/Put and Rainbow options. The student is also asked to elaborate a comparison in terms of computational complexity against the quadrature methods for different dimensions, and various combination of parameter sets within the mentioned pricing models.
400000024
chiheb.benhammouda@kaust.edu.sa
Multi-Asset Option Pricing, Fourier Transform, Lewis Valuation Approach, Damping Parameters, Lévy models, Hierarchical Adaptive Sparse Grids Quadrature, Monte Carlo
Computational Finance, Computational Mathematics, Numerical Analysis
As the main project deliverable, we expect a scientific report (eventually a research manuscript) including a detailed description and analysis of the proposed methodology developed within the course of the internship and providing all numerical experiments to showcase the versatility of the proposed heuristic framework.
The working environment the student will use should include a GIT repository shared with the project collaborators in which he includes all project-related materials such as progress reports, codes, figures, and important references from the literature to facilitate the supervision task and communicate ideas more effectively.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Resilient Models for Attacks Detection in Cyber-Physical Systems
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Charalambos Konstantinou
The goal of this project is developing methods to merge Machine Learning (ML) with physics-based models to create control algorithms can significantly enhance the resiliency of Cyber-Physical Systems (CPS). The approach will combine recent results in ML with control theory via constrained optimization to create novel systems and methods for protecting CPS from malicious cyber intruders via detection and prevention strategies. Specifically, the research project focuses on (1) refining the offline/online training and execution algorithms of ML models through physics-based constrained optimization, (2) developing secure estimation and control algorithms that are significantly more resilient to cyber-attacks than the state-of-the-art counterparts, and (3) improving the distributed resiliency for networked systems supporting multi-agent autonomous systems.
BAS/1/1692-01-01
charalambos.konstantinou@kaust.edu.sa
Cyber-physical systems, resiliency, cybersecurity, control methods, machine learning, physics-based methods.
Electrical and Computer Engineering/Computer Science
The goal of this internship is to analyze and improve existing data-driven and physics-based algorithms for attack detection in CPS. The student will be expected to learn about existing solutions, as well as the challenges and requirements to applying such techniques in their settings. With guidance of other team members, the student will then find new solutions for improving algorithmic resiliency in order to reduce cyber-risks related to the CPS operation. Candidates should be motivated to work on research-oriented problems with a team and develop new solutions. They should have a strong background in controls, in particular with regards to machine learning and power systems. They are also expected to be proficient in MATLAB/Simulink.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Real-Time (co-)Simulation for Cybersecurity
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Charalambos Konstantinou
The objective of this project is to use Real-Time Simulation (RTS) and co-simulation models for real-time prediction and control of disturbances related with attacks propagation. Essentially, the goal is to study how RTS via real-time communication interfaces of different RTS tools can run systems security, resilient and isolation algorithms in order to monitor and control the system under study.
BAS/1/1692-01-01
charalambos.konstantinou@kaust.edu.sa
Real-time simulation, cybersecurity, attacks, detection, prevention.
Electrical and Computer Engineering/Computer Science
The goal of this project is to develop and implement models in RTS using OPAL-RT hardware and software to study how cyber-attacks effects can propagate in real-time and investigate controls able to isolate such impact. Students should have backgrounds and experience using real-time simulators software such as RT-LAB, HYPERSIM, RSCAD, etc.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Regaining Trust in IoT
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Charalambos Konstantinou
While embedded devices play an increasingly significant role in the functional interoperability and coordination of various IoT systems, they are often developed without security in mind. The premise of this research is that effective security solutions can benefit from assistance by a trustworthy hardware root of trust. This research involves approaches that utilize device intrinsic (non-)silicon-based physical/hardware characteristics to verify, authenticate, and trust IoT devices. The goal is for such methods is to support and improve detection of security breaches in the device, network, or/and system level within critical information infrastructures. This can be achieved by leveraging the acquired hardware-level values in order to verify the integrity of each layer in a single device as well the integrity of the process variables within a control operation.
BAS/1/1692-01-01
charalambos.konstantinou@kaust.edu.sa
IoT, security, embedded systems, hardware security.
Computer Science and Engineering
1. Experimental evaluation of an existing hardware-based security approach.
2. Design and implementation of an improved approach incorporating a mixture of hardware signals: build an intrusion detection model capturing any malicious activity in any layer of the system stack.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Cyber-Secure Integration of Renewable Energy Sources
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Charalambos Konstantinou
This research project aims to contribute towards a resilient and secure power system employing power electronics for renewable energy sources (RES) integration. The goal is to examine the security implications of integrity and availability attacks in power transmission and distribution systems, and examine the performance and economic impact on real-time energy market operations. Risk assessment methodologies will quantify attack resources under certain level of adversarial knowledge. The objective is to enhance system cyber-(resiliency, security), while addressing disruptive cyber-physical events and preventing these effects from escalating into major failures and hence causing cascading blackout scenarios.
BAS/1/1692-01-01
charalambos.konstantinou@kaust.edu.sa
Renewable energy, cybersecurity, power electronics, prevention, cyber-physical energy systems.
Electrical and Computer Engineering/Computer Science
1. Improve an existing power system benchmark to support certain RES and their corresponding controllers.
2. Impact evaluation of attacks at the various connection points.
3. Examine effects of attacks on market operations.
4. Identify methods to improve system performance.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Ransomware in Industrial Control Systems
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Charalambos Konstantinou
According to a recent report, ransomware attacks on industrial entities increased more than 500% from 2018 to 2020. What is more, in 2020, ransomware, targeted ransomware, supply chain breaches and cloud connectivity all emerged as top-of-mind concerns for security teams at industrial enterprises. One of the biggest cyberattacks in history – the SolarWinds Orion supply chain breach – impacted as many as 18,000 organizations, many of which were industrial enterprises with physical operations. As a result, this project will study effective defense-in-depth security strategies, ensure an understanding of network interdependencies, and conduct crown jewel analysis to identify potential weaknesses that could disrupt business continuity and production in the event of ransomwares.
BAS/1/1692-01-01
charalambos.konstantinou@kaust.edu.sa
Ransomware, industrial control systems, cybersecurity, critical infrastructure.
Computer Science and Engineering
In this project, the students will examine the security issues of supply chain ransomware in industrial control systems (ICS) environments. One direction would be to investigate the applicability of unidirectional gateway technology to provide robust protection from such targeted attacks. Other methods include investigation of deep learning malware detector indicators.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Machine learning techniques for divergence-free field reconstruction
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Raul Tempone
The student will work on machine learning techniques applied to the study of divergence-free flow reconstruction. Specifically, the student will use different Neural Network architectures and training algorithms to reconstruct a divergence-free flow from sparse and noisy data. The student will also investigate the spectral properties of the reconstructed flow and use this information to improve the training algorithm. They will test the methods on several problems and compare results with existing methods. We will meet weekly during the duration of the project.
BAS/1/1604-01-01
raul.tempone@kaust.edu.sa
Machine Learning, Deep Neural Networks, Dynamical Systems, Numerical Analysis, Stochastic Numerics
Machine learning
As the main project deliverable, we expect a scientific report describing the methodology developed in the internship and its numerical use in various applications. The working environment the student will use should include a GIT repository for all project-related materials to facilitate proper verification processes. These materials include, among others, the codes and the saved input-outputs corresponding to all tested cases.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate
Machine Learning and Dynamical Systems
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Raul Tempone
The student will work on machine learning techniques applied to the study of dynamical systems.
Specifically, the student will use different Neural Network architectures to approximate the equations governing a given system's evolution.
This evolution may be intrinsically random, or we may add randomness to contemplate the possibility of approximating a large dimensional system by a low dimensional one.
He will also test this methodology in several applications and report his results to get familiar with the problem and its input data.
4000000024
erik.vonschwerin@kaust.edu.sa
Machine Learning, Deep Neural Networks, Dynamical Systems, Numerical Analysis, Stochastic Numerics
Computational and Applied Mathematics
As the main project deliverable, we expect a scientific report describing the methodology developed in the internship and its numerical use in various applications. The working environment the student will use should include a GIT repository for all project-related materials to facilitate proper verification and feedback processes. These materials include, among others, the codes and the saved input-outputs corresponding to all tested cases
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Numerical approximation of partial differential equations
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Daniele Boffi
The numerical approximation of partial differential equations is a relevant field of applied mathematics. Several projects are available at my research group, ranging from purely theoretical studied to more applied and computational tasks. Theoretical project will involve the study and analysis of the properties of the approximation of some partial differential equations. Computational projects are related to the implementation and testing of research codes for scientific computing. The areas of applications include electromagnetism, structural mechanics, fluid-dynamics, fluid-structure interactions.
BAS/1/1688-01-01
daniele.boffi@kasut.edu.sa
Numerical Analysis, Applied Mathematics, Scientific Computing
Numerical analysis, Applied Mathematics, Scientific Computing
Implementation and testing of the proposed algorithms. Study and analysis of the properties of approximating schemes for partial differential equations.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Causal and Fair Machine Learning
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Di Wang
The exact topic depends on the student's interest, student's background, and previous research experience. Generally speaking, there are mainly three topics of this project:
1. Designing Fair Machine Learning Algorithms. In this project, students will focus on how to make the current machine learning algorithms be fair. They will also explore the fairness issue of the current machine learning algorithms, especially for healthcare data.
2. Causality as a tool for de-biasing current deep learning algorithms. Students will use the idea of causality to different deep learning tasks to de-bias the datasets or algorithms in order to improve the accuracy and trustworthiness.
3. Causality as a tool for invariant learning. This project mainly focuses on transfer learning, students will use causality to design transfer learning algorithms.
BAS/1/1689-01-01
di.wang@kaust.edu.sa
Machine Learning, Deep Learning
Causal Inference, Fairness, Transfer Learning, Deep Learning
During the project, students will have opportunity to learn about some topics in trustworthy machine learning, especially fair learning, transfer learning and causal learning. They will learn and implement the SOTA methods. Hopefully, they may produce some publication after the intern.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Robust/Differentially Private Machine Learning
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Di Wang
The topic is flexible and depends on student's background, mathematical knowledge, previous research experience. Generally, this project mainly focuses on how to design robust (especially robust against to outliers or heavy-tailed distributions) or private (or forgettable) algorithms for some foundamental problems in machine learning, deep learning or statistics. Students will provide theoretical guarantees via using mathematical tools from probability, learning theory, optimization and high dimensional statistics. Also, student will analyze utility-privacy tradeoff or robustness-utility tradeoff.
BAS/1/1689-01-01
di.wang@kaust.edu.sa
Machine Learning, Privacy, Statistics
Machine Learning, Data Privacy, High Dimensional Statistics
Students will learn some fundamental techniques and results in learning theory, high dimensional statistics, optimization and differential privacy. They will also implement machine learning or statistics algorithms via using Matlab or Python. Hopefully they could have publications after the project.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Foundations of Private and Fair Statistics
Program:
Statistics
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Di Wang
The topic is flexible and depends on student's background, previous experience and mathematical skill. Specifically, in the topic, students will explore basic statistical model or problems for different types of data in the differential privacy or fairness model. For statistical model , topics include component analysis, supervised learning, mixture model , et al. For data, topics include survival data, functional data, network analysis. Students will design new algorithms to solve these problems and provide theoretical guarantees on the utility-privacy or utility-fairness tradeoff. Moreover, they will implement these algorithms on some sensitive data such as healthcare and biomedical data.
BAS/1/1689-01-01
di.wang@kaust.edu.sa
Machine Learning, Statistics, Privacy
Machine Learning, Data Privacy, Statistics
Students will learn basic techniques and terminologies in differential privacy, fairness and some topics in statistics. They will have the chance to implement the best-known algorithm for some specific problems. Hopefully, they could have some new results and publications after the project.
Statistics
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Protocol development for biomass quantification in membrane autopsies
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
A membrane autopsy is a valuable tool used in membrane (bio)fouling studies. One of the objectives of the autopsy is to quantify the amount of biomass. The current method involves sonication of the sample, followed by filtration and DOC measurement. The objective of the project is to investigate the influence of the sample preparation method on the measured value.
BAS/1/1024-01-01
Graciela Gonzalez Gil
Membrane filtration, biofouling, chemical analysis
Chemical & Biological engineering
The student should critically evaluate the current method, and propose or develop improvements/alternatives.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Undergraduate
Water Desalination and Reuse Center
Statistical models based on stochastic partial differential equations
Program:
Statistics
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
David Bolin
The student will learn about modern statistical methods based on stochastic partial differential equations (SPDEs). One important advantage with formulating statistical models using SPDEs is that it facilitates non-Gaussian extensions of several popular Gaussian models. Such extensions are useful for applications where the data has features that cannot be captured by Gaussian models. The goal of the project is to implement and compare these models for applications to longitudinal medical data and spatial environmental data.
BAS/1/1687-01-01
david.bolin@kaust.edu.sa
statistical-models-based-on-stochastic-partial-differential-equations-Spatial statistics, numerical analysis, probability theory
Statistics
Written report and computer code that reproduces the results
Statistics
Computer, Electrical and Mathematical Sciences and Engineering
Continual Learning
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Mohamed Elhoseiny
Continual learning aims to learn new tasks without forgetting previously learned ones. This is especially challenging when one cannot accessdatafrom previous tasks and when the model has a fixed capacity. In this project, the goal is to develop and improve the capability of the machine learning methods not to forget older concepts as time passes.References[1] Arslan Chaudhry, Marc'Aurelio Ranzato, Marcus Rohrbach,MohamedElhoseiny, Efficient Lifelong Learning with A-GEM, ICLR, 2019[2] Mohamed Elhoseiny,Francesca Babiloni, Rahaf Aljundi, ManoharPaluri,Marcus Rohrbach, Tinne Tuytelaars, Exploring the Challenges towards Lifelong Fact Learning, ACCV 2018https://arxiv.org/abs/1711.09601[3] Rahaf Aljundi, Francesca Babiloni, Mohamed Elhoseiny, Marcus Rohrbach, Tinne Tuytelaars, Memory Aware Synapses: Learningwhat(not) to forget, ECCV 2018https://arxiv.org/abs/1711.09601[4]Sayna Ebrahimi, Mohamed Elhoseiny, Trevor Darrell, MarcusRohrbachUncertainty-guided Continual Learning with Bayesian Neural Networks https://arxiv.org/abs/1906.02425For more references, you may visit https://nips.cc/Conferences/2018/Schedule?showEvent=10910 https://icml.cc/Conferences/2019/Schedule?showEvent=3528
BAS/1/1685-01-01
mohamed.elhoseiny@kaust.edu.sa
continual-learning
Computer Vision and Machine Learning
Develop a working research prototype for a continual learning approach1) students should learn about machine learning, deep learning, and the respective target application chosen for the internship.
2) students are expected to show capability to go from an idea to a working prototype; pushing the limits of what the state of the art can do.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Imagination Inspired Vision
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Mohamed Elhoseiny
Imagination has been the source of novel ideas that enable humanity to progress at an ever-faster rate. It is also is one of the key properties of human intelligence that enables us to generate creative products like music and art. Imagination is not only helpful for creating Art and Fashion, it also helps us see the world. The goal of this project is to focus on developing techniques that empower AI machines to see the world (computer vision)orto create novel products (e.g., fashion and art), hence the name Imagination Inspired Vision.Fore more context; see my talk on this topic, recorded at the University of Southern California; https://bluejeans.com/playback/s/jC9ksXIMhbHTw25sLghFgeGoWGNHcM 9VYc6QJQ8Z0yEq9X5aogZUWJ0AwDKz8hSR Vision-CAIR group at KAUST stands for Computer Vision- "C" Artificial Intelligence Research. "C" is for Content or Creative since we cover in our lab both Vision Content AI research and Vision- Creative AI research. For more information, please visit:http://www.mohamed-elhoseiny.com/vision-cair-group
BAS/1/1685-01-01
mohamed.elhoseiny@kaust.edu.sa
imagination-inspired-vision
Computer Vision and Machine Learning
Develop imagination inspired solutions machine learning research for helping understanding and the creation of the unseen.
1) students should learn about machine learning, deep learning, andtherespective target application chosen for the internship.
2) students are expected to show capability to go from an idea to a working prototype; pushing the limits of what the state of the art can do.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Microfluidics-based single-molecule fluorescence imaging of nanoscopic cellular interactions
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Satoshi Habuchi
The adhesion of cells to the endothelium occurs through spatio-temporally regulated interactions that are mediated by multiple intra- and inter-cellular components. The mechanism of cell adhesion has been investigated primarily using ensemble-based experiments, which provides indirect information about how individual molecules work in such a complex system. In this project, we develop microfluidics-based in-vitro live-cell single-molecule fluorescence imaging technique to unravel nanoscopic spatiotemporal interaction between adhesion molecules during the cell migration. Specifically, we aim to address some key questions in the initial step of hematopoietic stem cell homing mediated by selectin-ligand interactions.
BAS/1/1028-01-01
satoshi.habuchi@kaust.edu.sa
Bioscience
Fluorescence microscopy, Micro/nano fabrication, Optics, Biophysics, Immunology
Development of new microfluidics-based live-cell single-molecule fluorescence imaging technique.Characterization of nanoscopic spatiotemporal interaction between selectins and their ligands occurring during the cell migration.
BioScience
Biological and Environmental Sciences and Engineering
Biological stability of chlorinated and non-chlorinated drinking water
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
Drinking water is distributed from the treatment facility to consumers through extended man-made piping systems. The drinking water system should be microbiologically safe and biologically stable (WHO, 2006). The biological stability criterion refers to maintaining the microbial drinking water quality in time and distance from the point of drinking water production up to the point of consumption. This research will be conducted at the unique drinking water distribution system (DWDS) at KAUST a confined network of the same age supplied with reverse osmosis (RO) based drinking water. The aim of the project is to characterize temporal and spatial dynamics in biofilms and microbial community in the water from source to tap with the considerations of the impact of residual disinfectant use The results will allow better understanding whether residual chlorine is needed for distribution of RO produced drinking water and will lead to better insights on the biological stability of the produced water.
BAS/1/1024-01-01
johannes.vrouwenvelder@kaust.edu.sa
biological-stability-of-chlorinated-and-non-chlorinated-drinking-water
Chemistry, environmental science
Operate miniature drinking water distribution networks (preparation of solutions, setting up and run equipment, problem solving) Sample analysis (biological and chemical analysis, DNA extraction, etc.Data analysis Written and oral presentation of (intermediate) results.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Characterization of biofilm growthrate in a membrane system
Program:
Environmental Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
Membrane filtration plays an important role in seawater desalination and wastewater reclamation. Biofouling is an unacceptable loss of performance caused by the growth of bacteria inside the membrane element. The aim of the project is to establish relations between operational conditions, such as water velocity, production rate and nutrient concentration and the growth rate of biofilms. The results will allow better understanding and control of biofouling formation. The two main methods to observe the thickness of the biofilm are via its hydraulic resistance and via optical coherence tomography (OCT).
BAS/1/1024-01-01
johannes.vrouwenvelder@kaust.edu.sa
characterization-of-biofilm-growthrate-in-a-membrane-system
chemical engineering, environmental science, etc
Formulate a research question and design the experiments accordingly.Run experiment (preparation of solutions, setting up and run equipment, problem solving, OCT-scan of biofilm)Data analysisWritten and oral presentation of (intermediate) results.
Environmental Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Gradient compression for distributed training of machine learning models
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Modern supervised machine learning models are trained using enormous amounts of data, and for this distributed computing systems are used. The training data is distributed across the memory of the nodes of the system, and in each step of the training process one needs to aggregate updates computed by all nodes using local data. This aggregation step requires communication of a large tensor, which is the bottleneck limiting the efficiency of the training method.To mitigate this issue, various compression (e.g., sparsification/quantization/dithering) schemes were propose in the literature recently. However, many theoretical, system-level and practical questions remain to be open. In this project the intern will aim to advance the state of the art in some aspect of this field. As this is a fast moving field, details of the project will only be finalized together with the successful applicant. Background reading based on research on this topic done in my group:https://arxiv.org/abs/1905.11261https://arxiv.org/abs/1905.10988 https://arxiv.org/abs/1903.06701 https://arxiv.org/abs/1901.09437 https://arxiv.org/abs/1901.09269https://www.frontiersin.org/articles/10.3389/fams.2018.00062/abstracthttps://arxiv.org/abs/1610.05492https://arxiv.org/abs/1610.02527
BAS/1/1677-01-01
peter.richtarik@kaust.edu.sa
Computer Science
computer science, mathematics, machine learning
Ideally author or coauthor a research paper, and submit it to a premier conference in the field (e.g., ICML, AISTATS, NeurIPS, ICLR).
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Federated Learning
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Federated Learning (FL) enables mobile phones to collaboratively learnashared prediction model while keeping all the training data on device, decoupling the ability to do machine learning from the need to store the data in the cloud. This goes beyond the use of local models that make predictions on mobile devices by bringing model training to the device as well. FL was co-invented by my former student Jakub Konecny, myself and Google. We have launched. a FL system in 2017, it is now in use in more than 1 billion Android devices:https://ai.googleblog.com/2017/04/federated-learning-collaborative.html https://ai.google/research/pubs/pub45648 In this project we will investigate further improvements and applications of FL.
BAS/1/1677-01-01
peter.richtarik@kaust.edu.sa
Machine Learning
Machine Learning
Ideally a joint research paper.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Towards a Principled Understanding of Deep Learning
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Deep learning models provide state of the art performance on many practical machine learning tasks. However, there is a large gap between our theoretical / conceptual understanding and practice.The intern will work in one of the follow areas, depending on interest and background: Deep learning modelsAdversarial attacks and robustnessOptimization for deep learningGeneralization of deep learningGANsModel compression
BAS/1/1677-01-01
peter.richtarik@kaust.edu.sa
AI
computer science, mathematics
Ideally contribution to a research paper.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Topics in Machine Learning and Optimization
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Richtarik
Topics in machine learning (ML). The project can be of a theoretical nature (e.g., design of optimization algorithms for training ML models; building foundations of deep learning; distributed, stochastic and nonconvex optimization), or of a practical nature (e.g., creative application and modification of existing techniques to problems in federated learning, computer vision, health, robotics, engineering). The precise topic will be decided together with the successful applicants, and will be tailored to their skills and background.
ASP/1/1669-01-01
peter.richtarik@kaust.edu.sa
topics-in-machine-learning-and-optimization
Computer Science, Mathematics or a related discipline
Original research – contribution to a research paper.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Molecular mechanisms underlying growth and defense in plants
Program:
Plant Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Ikram Blilou
When attacked by pathogens, plants allocate their energy and resources into defense responses at the expense of growth. Hence, understanding the mechanisms by which plants prioritize their responses is instrumental for improving plant defense and growth and consequently increasing crop yield. Recently, we have established a link between the defense hormone Jasmonic Acid (JA) and a transcription factor pathway with key roles in development. We have found that the developmental regulators BIRD proteins mediate Jasmonic acid defense response through interacting with core JA signaling pathway genes. The project aims to dissect the molecular framework underlying the dual function of these protein complexes. The identified signaling networks and pathways can then be rewired to allow simultaneous growth and defense. we will use the following tools: RNAseq, genome editing tools, fluorescence microscopy imaging amd a range methods for detecting protein-protein interactions in vitro and in vivo.
BAS/1/1081-01-01
ikram.blilou@kaust.edu.sa
molecular-mechanisms-underlying-growth-and-defense-in-plants
Developmental biology, cell biology
The gained knowledge will be used to generate resistant crops with optimal growth behavior using genome editing tools.
Plant Science
Biological and Environmental Sciences and Engineering
Center for Desert Agriculture
Spatio temporal analysis of expression of genes controlling assymetric stem cell division and tissue patterning in plants
Program:
Plant Science
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Ikram Blilou
BIRDs nuclear factors have been described to regulate root growth through association with the transcription factors SCARECROW and SHORTROOT, however their function in other organs remain to be elucidated. Here we propose to dissect network function in lateral roots and leaves. We will determine their physical associations spatially and during different developmental stages. We will also assess whether their target are regulated similarly.Objectives: In this project we aim to dissect how BIRD proteins regulate leave tissue patterning and map their localization in different mutant backgrounds. In addition, we will dissect binding sites in different target genes and alter specific binding by site directed mutagenesis. Technologies: confocal imaging microscopy, site directed mutagenesis, promoter activities using dual luciferase, plant phenotyping, cloning using gateway technology
ASP/1/1669-01-01
ikram.blilou@kaust.edu.sa
spatio-temporal-analysis-of-expression-of-genes-controlling-assymetric-stem-cell-division-and-tissue-patterning-in-plants
Plant Biology
Map the expression of the genes at different developmental stages and dissect thein binding motifs
Plant Science
Biological and Environmental Sciences and Engineering
Center for Desert Agriculture
Inverse Problems in Imaging
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Wolfgang Heidrich
Inverse problems are abundant in the field of imaging, and range from simple image processing tasks such as denoising and deblurring to full-scale reconstruction problems like computed tomography (reconstructing 3D volumes from 2D projections). The purpose of this internship is to learn about inverse problems, and critical techniques for solving them, including convex and non-convex optimization, sparse coding, and compressive sensing.
BAS/1/2902-01-01
wolfgang.heidrich@kaust.edu.sa
This project requires some familiarity with basic numerical methods as well as programming skills. Close collaboration with other team members is expected. Possibility for co-authoring a scientific article in a conference or journal.
Computer Science, Applied Mathematics.
This project requires some familiarity with basic numerical methods as well as programming skills. Close collaboration with other team members is expected. Possibility for co-authoring a scientific article in a conference or journal.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Computational Cameras
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Wolfgang Heidrich
Computational cameras are imaging systems that are combinations of optics, electronics, and algorithms that jointly enable new approaches to image sensing. Computational imaging systems are of interest for applications such as polarization imaging, hyperspectral cameras, time-of-flight and depth imaging, light fields, high speed cameras, or cameras with small and exotic form factors. The internship will be to learn about computational imaging approaches, and work in an interdisciplinary team to develop new camera systems in one of the application domains.
BAS/1/2902-01-01
wolfgang.heidrich@kaust.edu.sa
Possibility for co-authoring a scientific article in a conference or journal.
Computer Science, Electrical or Optical Engineering
Depending on the background of the student, the work can be more optics oriented or more software oriented. Close collaboration with other team members is expected. Possibility for co-authoring a scientific article in a conference or journal.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Fouling in Membrane Filtration Systems
Program:
Earth Science and Engineering
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Johannes Vrouwenvelder
In the last decades the use of membrane systems for fresh water production has increased strongly to supply the growing water demand due to increasing human population, industrial and agricultural activity, economic growth and urbanization. Fouling represent one of the major drawbacks of membrane systems. In this project, we aim to explore different techniques in order to study the fouling developed in the system and relate with the membrane performance decrease.
ASP/1/1669-01-01
johannes.vrouwenvelder@kaust.edu.sa
fouling-in-membrane-filtration-systems
Environmental science and engineering
The student will learn various approaches to characterize the fouling developed in membrane filtration systems. He/She will learn different techniques (i.e. Confocal, Flow Cytometry, ATP, SEM, LCOCD etc). Several experiments will be run in order to relate the fouling developed in the system with the overall performance.
Earth Science and Engineering
Biological and Environmental Sciences and Engineering
Water Desalination and Reuse Center
Cutting-edge research on materials, devices, or physics of the third-generation semiconductor
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Xiaohang Li
The wide bandgap semiconductors, also known as the third-generation semiconductors, have enormous potentials to revolutionize almost every industry on the planet and in space. Because of the unique and superior properties, they can be made in ultra-efficient, ultra-sensitive and ultra-reliable optical and electronic devices. Despite being in the early phrase of development and commercialization, the third-generation semiconductors have already resulted in industries worth of hundreds of billions USD and creating numerous jobs, as well as 2014 Nobel Prize in Physics. Opening your phone, computers and anything using electricity, you will likely find plenty of them. More potentials are to be unlocked by smart and hard-working researchers such as you. This VSRP project is offered by the Advanced Semiconductor Laboratory, a world-leading laboratory with state-of-the-art facilities in the third-generation semiconductor research. The VSRP students will have the opportunity to learn the latest materials, devices, and physics of the third-generation semiconductor as well as the combination with other exciting things such as 2D materials and quantum photonics. More importantly, every VSRP student will have his/her own project to solve a key problem. The project needs 4-6 months to be completed. It is going to be an exciting period with intense training and research work both theoretically and experimentally. Successful students can likely publish their results in prestigious scientific venues.
BAS/1/1664-01-01
xiaohang.li@kaust.edu.sa
cutting-edge-research-on-materials-devices-or-physics-of-the-third-generation-semiconductor-semiconductor, photonics, electronics, integrated circuits.
Electrical/Electronic Engineering, Physics, Material Science, Chemistry
In research, no deliverables can be compared with a patent or a peer-review paper. In the past, all the VSRP students can generate patents or publish first-authored or co-authored papers in prestigious journals. The publication record has help strengthened their credentials greatly for future career development. Therefore, the incoming VSRP students are expected to do the same. PS: one example can be found here: https://goo.gl/8sorGf
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Complex optoelectronics materials and phenomena
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Andrea Fratalocchi
Design, fabrication and characterization of new complex materials and phenomena for different optoelectronics applications.
BAS/1/1628-01-01
andrea.fratalocchi@kaust.edu.sa
complex-optoelectronics-materials-and-phenomena-Artificial Intelligence, hardware accelerators, hyperspectral imaging, Nanophotonics
Physics or Engineering or Chemistry
Learning of different nanofabrication techniques; assembly of complex materials structures for different photonics applications
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
An iPSCs-based approach to model Type Two Diabetes in-vitro
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Antonio Adamo
Studying the transcriptional and epigenetic mechanisms dysregulated in patients affected by metabolic disorders such as insulin resistance (IR) and type 2 diabetes mellitus (T2DM) is essential to derive efficient pharmacological approaches. We are seeking an outstanding student to work on a project focused on the study of the role of histone modifiers to the onset of metabolic disorders.
BAS/1/1077-01-01
antonio.adamo@kaust.edu.sa
an-ipscs-based-approach-to-model-type-two-diabetes-in-vitro-Induced pluripotent stem cells (iPSCs), Chromosomal aneuploidies, Diabetes, organoids
Molecular and Cellular Biology and/or Bioinformatics
The selected candidate will use human stem cells and terminally differentiated glucose sensitive cell types and will acquire skills in molecular biology techniques including Chromatin Immuno-precipitation (ChIP), quantitative real-time PCR (Q-PCR) and next generation sequencing (NGS).
BioScience
Biological and Environmental Sciences and Engineering
Screening for Carotenoid-Derived Signaling Molecules
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Salim Al-Babili
The project focuses on novel signaling molecules involved in plant development and response to environmental stress. It includes studies on the activity of selected carotenoid-metabolizing enzymes and the identification of their enzymatic products. Biological activity of products will be investigated by developmental assays using Arabidopsis and rice and by determining the effect of these compounds on the transcript levels of selected genes including strigolactone biosynthesis genes. These studies will be complemented by geno- and phenotyping of mutants disrupted in the corresponding genes.
ASP/1/1669-01-01
salim.babili@kaust.edu.sa
screening-for-carotenoid-derived-signaling-molecules
Plant Biochemistry and Development
Identification of new bioactive compounds/Better understanding of the regulation of strigolactone biosynthesis. Significant contribution to a publication
BioScience
Biological and Environmental Sciences and Engineering
Center for Desert Agriculture
Machine Learning for Graphs
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Jesper Tegner
We have numerous projects where we work networks or graphs of various kinds, biological ones in particular. Networks can be undirected, directed with or without signs, discrete or continuous. For publications see google scholar (https://scholar.google.com/citations hl=sv&user=_DUppAgAAAAJ&view_op=list_works&sortby=pubdate).Challenges and sub-projects include:- How to compare 2 and several networks,review,benchmark current methods, invent new efficient algorithms for network comparison-Analyze networks embedded in hyperbolicspace-Review, benchmark current methods for embedding networks into anML framework-Generative modeling of networks constrained by correlational information from data-sets-Partially overlapping networks,analyzetheirputativealignment,constructionof multi-layer networks from several partially overlappinggraphs.-Search and propagation in multi-layernetworks-Alignment of several but different real protein interaction networks
ASP/1/1669-01-01
jesper.tegner@kaust.edu.sa
LivingSystems
Computer Science, Applied Mathematics
Individual projects will be tailored and narrowly designed from the above palette according to interest of the student, technical proficiency, and level of study. We expect you (a) to bring enthusiasm, creativity, and hard work, (b) give lab seminars on your work, and (c) produce a final written report.In returnthis facilitates your critical thinking, presentations skills, and scientific writing.Yourresearch, in collaboration and with support of team members, may lead to scientific publications. You will also get a good hands-on perspective at the frontier of machine intelligence and its applications in an interdisciplinary research group andenvironment.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Undergraduate
Machine Learning for Biological and Medical Imaging
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Jesper Tegner
We have recently developed hybrid machine learning techniques for retinal images. For publications see google scholar(https://scholar.google.com/citations?hl=sv&user=_DUppAgAAAAJ&view_op=list_works&sortby=pubdate). Challenges include limited number of images, unbalanced data-sets, and interpretability of feature representations. Subprojects include toFormulation and training of robust generative models (e.g.GANsand versions thereof) for the Retinal Dataset-Extend and apply the techniques to melanoma datasets Develop and apply techniques to identify meaningful (biological/medical) feature representation from a successfulclassification
ASP/1/1669-01-01
jesper.tegner@kaust.edu.sa
bio
Computer Science, Applied Mathematics
Individual projects will be tailored and narrowly designed from the above palette according to interest of the student, technical proficiency, and level of study. We expect you(a)tobringenthusiasm,creativity,andhardwork,(b)givelabseminarsonyourwork, and (c) produce a final written report.In returnthis facilitates your critical thinking, presentations skills, and scientific writing.Yourresearch, in collaboration and with support of team members, may lead to scientific publications. You will also get a good hands-on perspective at the frontier of machine intelligence and its applications in an interdisciplinary research group andenvironment.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Graduate
Algorithmic Information Theory for Machine Intelligence
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Jesper Tegner
We recently developed numerical and computational techniques to use algorithmic information theory (AIT) to the analysis of networks. For publications see google scholar(https://scholar.google.com/citations?hl=sv&user=_DUppAgAAAAJ&view_op=list_works&sortby=pubdate).Subprojects include to- Develop python packages for AIT analysis of large-scalenetworks- Develop new AIT network embedding algorithms- Analyze Convolutional Networks a representational learning usingAIT- Quantify and benchmark AIT network analysis with othertechniques- Large-scale computation of AIT networks using a supercomputer(Shaheen)Newand improved numerical approximation of algorithmic complexity using massive computations of Turing Machines on Shaheen(supercomputer)
ASP/1/1669-01-01
jesper.tegner@kaust.edu.sa
algorithmic-information-theory-for-machine-intelligence-Machine Learning, Artificial Intelligence, Entropy, Complexity
Computer Science, Applied Mathematics
Individual projects will be tailored and narrowly designed from the above palette according to interest of the student, technical proficiency, and level of study. We expect you (a) to bring enthusiasm, creativity, and hard work, (b) give lab seminars on your work, and (c) produce a final written report. In return this facilitates your critical thinking, presentations skills, and scientific writing. Your research, in collaboration and with support of team members, may lead to scientific publications. You will also get a good hands-on perspective at the frontier of machine intelligence and its applications in an interdisciplinary research group and environment.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Learning Generative Causal Models from Sparse Temporal Observations during Cellular Reprogramming
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Jesper Tegner
Recent work on stem cells and different mature specialized cells in different systems/organs (neurons, blood cells,) has revealed a stunning plasticity and capacity of reprogramming cells. For example, mature cells can be reprogrammed into pluripotent stem cells, and exciting work on engineered design of tissues and organs (organoids) are underway. On the one hand the community has since the sequencing of the human genome produced very efficient tools to read off the corresponding molecular events accompanying reprogramming and engineering of cells. Recently, the discovery of the CRISPR techniques has equipped us with unprecedented opportunities for precise writing or editing of the genomes. These developments in fundamental biology and biotechnology are currently opening new tools and perspectives of vital significance for drug development, regenerative medicine, synthetic biology, and personalized medicine. Yet, in essence all these efforts require and would be greatly facilitated if we could advance from correlative data-analysis to a predictive discovery of which interventions (edits, engineering) are producing which effects. Thus, we are facing the fundamental problem on how to discover causal relations from data, or in other words, can we derive quantitative predictive laws fromdata?We offer internships forseveral highly motivatedbachelor (B.Sc.) ormaster (M.Sc.) students who will explore this fundamental question primarily from a computational standpoint. This includes using high-performance simulations of dynamical models, and design of algorithms in a controlled in-silico environment. For example, to identify (a) efficient algorithms for generation of ensembles of dynamical models, (b) use supervised deep learning algorithms for pattern discovery in large-scale simulation data-sets, (c) to perform deep data-driven analysis of computational models in biology, (d) pursue investigations of transfer entropy and related techniques for system identification. These tools will be tested utilizing rich and recent molecular data on cellular reprogramming.
BAS/1/1078-01-01
jesper.tegner@kaust.edu.sa
learning-generative-causal-models-from-sparse-temporal-observations-during-cellular-reprogramming-Causality, Machine Learning, Stem Cells
computer science, mathematical modeling, machine learning, systems biology, bioscience
Individual projects will be tailored and narrowly designed from the above palette according to interest of the student, technical proficiency, and level of study. The project is suitable for candidates fascinated by dynamical causal systems, be it computational or those we find in the natural world, i.e. living cells. We expect you (a) to bring enthusiasm, creativity, and hard work, (b) give lab seminars on your work, and (c) produce a final written report.In returnthis facilitates your critical thinking, presentations skills, and scientific writing.Yourresearch, in collaboration and with support of team members, may lead to scientific publications. We publish avidly in both bioscience and computational sciences, not for the fame but rather as steps aiming to and motivated both by our quest of asking fundamental questions of relevance to human nature and discovery of transformative intelligent technologies inspired from nature. You will get a good hands-on perspective on the frontiers in dynamical systems and bioscience using state-of-the-art simulation and machine learning tools.
BioScience
Biological and Environmental Sciences and Engineering
Deep Learning and Machine Intelligence for Single Cell Genomics
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Jesper Tegner
Single cell biology and genomics in particular are currently transforming the biosciences. Single cell RNA sequencing (scRNAseq), method of the year 2013 (Nature Methods), has now matured and large amounts of scRNAseq are now available. These data, characterizing living systems at an unprecedented level of resolution, hold the promise to set the stage for a fundamental quantitative understanding of living systems with special reference to genomic regulation and collective computation. Yet, there are a number of open problems on how to think about these data and how to pragmatically analyze them.In parallel, we have witnessed a rapid development in machine learning. The rise of computation, such as supercomputers (shaheen@KAUST) and GPU based techniques, in conjunction with data explosion (often referred to as big data), has fuelled the development of new techniques aiming for machine intelligence. In particular, techniques inspired from livings systems, such as deep convolutional networks, currently experience a renaissance. Driving forces include not only data and computation but also the availability of suite of open source platforms (e.g. Theano, Caffe, Torch7, TensorFlow) supporting machine-learning algorithms. These algorithms represent industry standard for processing images, speech, text, and runs on the majority of services and devices provided by Google, Amazon, Facebook, to name a few big players, as well as a numerous startups.We offer internships for several highly motivated bachelor (B.Sc.) or master (M.Sc.) students who will identify (a) appropriate supervised deep learning architectures and training algorithms for scRNAseq data, (b) explore generative adversarial network (GANs) techniques for estimation of high-dimensional data distribution in the single cell gene expression space. This work will be used to develop new techniques and to address open problems in single cell genomics such as pseudo-temporal ordering of single cell data, clustering of data, investigate representations, transfer learning, and unsupervised feature discovery.
BAS/1/1078-01-01
jesper.tegner@kaust.edu.sa
deep-learning-and-machine-intelligence-for-single-cell-genomics-Machine Learning, Artificial Intelligence, Genomics
computer science, bioscience, machine learning, systems biology, artificial intelligence
Individual projects will be tailored and narrowly designed from the above palette according to interest of the student, technical proficiency, and level of study. The project is suitable for candidates fascinated of living systems, interested in cutting edge bioscience, and artificial intelligence for science and not for discovering cats in YouTube. We expect you (a) to bring enthusiasm, creativity, and hard work, (b) give lab seminars on your work, and (c) produce a final written report.In returnthis facilitates your critical thinking, presentations skills, and scientific writing.Yourresearch, in collaboration and with support of team members, may lead to scientific publications. We publish avidly in both bioscience and computational sciences, not for the fame but rather as steps aiming to and motivated both by our quest of asking fundamental questions of relevance to human nature and discovery of transformative intelligent technologies inspired from nature. You will also get a good hands-on perspective at the frontier of bioscience and machine intelligence in an interdisciplinary research group and environment.
BioScience
Biological and Environmental Sciences and Engineering
Brain Inspired Computing
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Khaled Nabil Salama
Diagnostics become more important in third world countries as the people have limited access to medical care systems and have less awareness of healthy lifestyles. There is certainly a need for on-site detection in the life science fields; and for point-of-care diagnostics in rural areas of underdeveloped countries so that even an unskilled person can use the device to determine the presence of disease-causing markers. Currently, diagnostics commonly employ long assay time, trained personnel, sophisticated instruments, and require financial support. A good approach to overcome this current situation would be the use of flexible and paper-based point-of-care devices to detect specific biomarkers. Biomarkers provide insight into normal biological processes, pathogenic processes, and pharmacological therapeutic interventions. Hence, the development of more compatible, reliable, convenient, simple, easyto- use systems would be of great use to a person less skilled in medical diagnostic procedures.
BAS/1/1605-01-01
khaled.salama@kaust.edu.sa
brain-inspired-computing-XAI, machine learning, Deep learning, Fpga
Electrical Engineering, Computer science, physics, neurosciences
1- A complete biosensor design and simulation
2- Potential fully operational Hardware device
3- Full detailed report on the design and participation in manuscript and papers writeup
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Biomedical Sensors
Program:
Electrical Engineering
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Khaled Nabil Salama
Conventional computing based on Von Neumann architecture has been shown to be approaching its limits in scalability and power consumption. If solved with contemporary machines, today’s applications in science and industry related to data analysis, pattern recognition and prediction would demand a huge computing power. In the era of ubiquitous sensing and data acquisition, a way to cheaply and power efficiently make sense of the collected ‘big data’ is of utmost importance. Here, human brain’s efficiency becomes the ultimate standard and inspiration for any future technology. Such trend of understanding the brain behavior is currently gaining a huge attention worldwide. At the sensors lab, students under the supervision of Prof. K.N. Salama are exploring new computing technologies miming the way our brains process and store data.
BAS/1/1605-01-01
khaled.salama@kaust.edu.sa
sensor
Electrical Engineering, Computer science, physics, neurosciences
Report of state of art brain inspired computers; Implementation of state of art;
Exploration of neuromorphic architectures;
Simulation and comparison of various alternatives.
Electrical Engineering
Computer, Electrical and Mathematical Sciences and Engineering
Novel Micro-optical structures on optical fiber tip with two-photon lithography
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Carlo Liberale
Optical fibers are nowadays an ubiquitous core element of telecommunication systems, new laser technologies and biomedical devices. Manufacturing techniques for optical fibers have been developed and refined in order create manifold geometries and optical properties (e.g.Dual clad fibers, fiber bundles, Photonic Crystal Fibers, to name a few). Yet the capability to fabricate complex miniaturized structures integrated with optical fibers to realize important optical functions (like beam shaping, beam deflection, fiber optical tweezers, etc.) has been demonstrated only very recently.The project will focus on the fabrication of optical wave-guiding structures on the tip of optical fibers exploiting to flexibility, resolution and 3D fabrication capability of Laser Direct Writing based on Two-Photon Lithography (TPL).
ASP/1/1669-01-01
carlo.liberale@kaust.edu.sa
novel-micro-optical-structures-on-optical-fiber-tip-with-two-photon-lithography
Electrical Engineering, physics
Learn Two-Photon Lithography. Design structures using wave-optics propagation software. Fabricate structures on optical fibers. Measurements to assess optical function of fabricated structures.
BioScience
Biological and Environmental Sciences and Engineering
Development of a novel Stimulated Raman Scattering microscopy system
Program:
BioScience
Division:
Biological and Environmental Sciences and Engineering
Faculty Name:
Carlo Liberale
Microscopy techniques based on vibrational spectroscopy are poised to be part of the next generation of microscopes for biological applications based on their unique chemical contrast and sub-cellular resolution for non-invasive, non-destructive and label free imaging of biological samples as live cells. The project will focus on the development of a fast and low-noise detection system in a setup for microscopic vibrational spectroscopy based on Stimulated Raman Scattering, which is one of the most advanced and sensitive methods for label-free microscopy for bio-imaging. The system will be applied to vibrational imaging of cancer stem cells to unveil their specific bio-chemical signatures.
ASP/1/1669-01-01
carlo.liberale@kaust.edu.sa
development-of-a-novel-stimulated-raman-scattering-microscopy-system
Electrical Engineering, physics
Learn Coherent Raman Scattering techniques. Design, assemble and test circuitry for multiplexed and low-noise detection in a Stimulated Raman Scattering microscopy setup based on femtosecond broadband laser sources. Demonstrate fast and high S/N ratio imaging with multiplex (broadband) Stimulated Raman Scattering microscopy.
BioScience
Biological and Environmental Sciences and Engineering
Theoretical and numerical study on complex materials
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Ying Wu
The students are required to perform theoretical and numerical studies on wave propagation in artificial structures with complex structures. The contents include but are not limited to Fano resonance, absorption, trapping of electromagnetic or acoustic waves.
BAS/1/1626-01-01
ying.wu@kaust.edu.sa
theoretical-and-numerical-study-on-complex-materials
Physics, Mathematics, Material Sciences, and related
Understand and derive wave equations. Gain hands-on experience in solving wave equations both analytically and numerically. Model layered structures and derive transmission and reflection coefficients. Become familiar with homogenization techniques
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Classification of long non-coding RNAs
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Xin Gao
Long non-coding RNAs (lncRNAs) have been found to perform various functions in a wide variety of important biological processes. To make easier interpretation of lncRNA functions and conduct deep mining on these transcribed sequences, it is important to classify lncRNAs into different groups. lncRNA classification attracts much attention recently. The main technical difficulties are 1) the limited number of known lncRNAs (small training sample size), and 2) the very different lengths of lncRNAs. This project is to apply and further improve the string kernel algorithms developed in Prof. Gao’s group to the lncRNA classification problem.
BAS/1/1624-01-01
xin.gao@kaust.edu.sa
Long non-coding RNAs (lncRNAs) have been found to perform various functions
Computer science, bioinformatics, electrical engineering, applied mathematics
The visiting student for this project is expected to finish the following deliverables:1. Give a throughout literature review on lncRNA classification methods and potential machine learning methods that can be applied to this problem.
2. Get familiar with the string kernel algorithms developed in Prof. Gao’s group.
3. Gather an lncRNA dataset to be used as the benchmark set for this research.
4. Conduct a comprehensive comparative study of the state-of-the-art methods on the benchmark set.
5. Apply the string kernel algorithms on lncRNA classification and evaluate the performance.
6. If necessary, improve the string kernel algorithms to achieve better performance.Write a report to summarize the results.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Computational Bioscience Research Center
Nonlinear Partial Differential Models
Program:
Applied Mathematics and Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Diogo Gomes
In this project we will study some nonlinear partial differential equations models that arise in applications ranging from population dynamics, mean-field games, quantum chemistry and mechanics, medicine, quasi-geostrophic flows, and water waves.
11111.0000000000
diogo.gomes@kaust.edu.sa
nonlinear-partial-differential-models
Mathematics or related field
The objective of the project is to study in detail modeling, analytical and numerical aspects of partial differential equations from concrete applications. A final report and presentation will be required. The work will be developed and the guidance of Prof. Diogo Gomes and the Research Scientist Dr. Saber Trabelsi.
Applied Mathematics and Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Novel Pincer complexes for catalysis
Program:
Chemistry
Division:
Physical Sciences and Engineering
Faculty Name:
Kuo-Wei Huang
The student will work on the design and synthesis of 2-amino-pyridine based pincer ligands (3-10 steps) and the preparation of their corresponding transition metal complexes. Students will trained on standard organic synthesis knowledge and Schlenk skills. For more information see:https://pubs.acs.org/doi/10.1021/acscatal.8b04495
BAS/1/1334-01-01
kuowei.huang@kaust.edu.sa
Chemistry
Catalysis and Organometallics
Preparation and characterization of new complexes.
Development of catalytic applications
Chemistry
Physical Sciences and Engineering
KAUST Catalysis Center
Role of non-classical hydrogen bonding in organocatalysis
Program:
Chemistry
Division:
Physical Sciences and Engineering
Faculty Name:
Kuo-Wei Huang
The student will utilize kinetic (NMR, IR, etc) and computational tools (DFT calculations) to elucidate the role of hydrogen bonding network and in particular the non-classical hydrogen bonding in the thiourea and guanidine-based organocatalysis.
BAS/1/1334-01-01
kuowei.huang@kaust.edu.sa
role-of-non-classical-hydrogen-bonding-in-organocatalysis-catalysis, DFT calculation, Mechanism, non-covalent bond
Chemistry
Assist in the kinetic study and DFT calculations.
Chemistry
Physical Sciences and Engineering
KAUST Catalysis Center
Deep Learning for Visual Computing
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Wonka
The internship will be in the area of visual computing (computer graphics, computer vision, remote sensing). The exact topic depends on the student's interest, student's background, and current research topics in thegroup. To give some examplesof past projects, our group worked on topics related to generative adversarial networks for synthesizing images, textures, point clouds, 3D geometry, ..., networks using graphs as representations, and 3D reconstruction problems such as depth from one or multiple images, primitive fitting, indoor room layout reconstruction and segmentation of images.
BAS/1/1630-01-01
peter.wonka@kaust.edu.sa
deep-learning-for-visual-computing-computer vision, deep learning, machine learning
Computer Graphics, Computer Vision, Deep Learning
There are two learning objectives for the internships:1) students should learn about machine learning, deep learning, andtherespective target application chosen for the internship.2) students should implement a working prototype
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center
Computer Graphics, Computer Vision, and Visualization
Program:
Computer Science
Division:
Computer, Electrical and Mathematical Sciences and Engineering
Faculty Name:
Peter Wonka
The internship is in the area of graphics, vision, or visualization. The exact topic is determined in discussion with the student to obtain a good fit with the student’s interest and background. Example projects are 3d reconstruction from images and laser scans, geo-spatial visualization, remeshing, sampling, procedural modeling, and design computation using machine learning.
11111.0000000000
peter.wonka@kaust.edu.sa
computer-graphics-computer-vision-and-visualization-computer graphics, computer vision, deep learning
Computer Science
The student should either contribute to an existing research project or leading his/her own project. That includes reading literature, solving technical problems, and implementation.
Computer Science
Computer, Electrical and Mathematical Sciences and Engineering
Visual Computing Center